4IJS | pdb_00004ijs

Crystal structure of nucleocapsid protein encoded by the prototypic member of orthobunyavirus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089912	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Bunya_nucleocap	e4ijsD1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)
C	Bunya_nucleocap	e4ijsC1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)
B	Bunya_nucleocap	e4ijsB1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)
A	Bunya_nucleocap	e4ijsA1	A: alpha complex topology	X: Leanyer virus nucleoprotein-related (From Topology)	H: Leanyer virus nucleoprotein-related (From Topology)	T: Leanyer virus nucleoprotein-related	F: Bunya_nucleocap	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
D	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
C	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
C	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
B	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
B	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
A	1.20.142.20	Mainly Alpha	Up-down Bundle	Poly(ADP-ribose) Polymerase	domain 1	CATH (4.3.0)
A	1.10.472.180	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00952	Bunyavirus nucleocapsid (N) protein (Bunya_nucleocap)	Bunyavirus nucleocapsid (N) protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, B, C, D	Nucleoprotein	RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR043011	Bunyavirus nucleocapsid (N) , C-terminal domain	Homologous Superfamily
A, B, C, D	IPR043012	Bunyavirus nucleocapsid (N) , N-terminal domain	Homologous Superfamily
A, B, C, D	IPR001784	Bunyavirus nucleocapsid (N) protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.