4IGL | pdb_00004igl

Structure of the RHS-repeat containing BC component of the secreted ABC toxin complex from Yersinia entomophaga

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	TcB, TcA-binding domain-like	8047403	4005626	SCOP2 (2022-06-29)
A	SCOP2 Family	NTD-SpvB-like	8051661	4007457	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PAL-like	8102242	3002726	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Effector protein SpvB, N-terminal domain-like	8102233	3002724	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	PAL-like	8102242	3002726	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Effector protein SpvB, N-terminal domain-like	8102233	3002724	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SpvB,TcdB_toxin_midC,TcdB_toxin_midN	e4iglA1	A: a/b three-layered sandwiches	X: GFP-like	H: FKBP-like	T: FKBP-like	F: SpvB,TcdB_toxin_midC,TcdB_toxin_midN	ECOD (v294.1)
C	Fapy_DNA_glyco	e4iglC4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Fapy_DNA_glyco	ECOD (v294.1)
B	Nuc_deoxyrib_tr	e4iglB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Nuc_deoxyrib_tr	ECOD (v294.1)
D	TTc_toxin_rep	e4iglD1	A: a/b three-layered sandwiches	X: GFP-like	H: FKBP-like	T: FKBP-like	F: TTc_toxin_rep	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.180.10.10	Mainly Beta	Shell	RHS repeat-associated core	RHS repeat-associated core	CATH (4.3.0)
D	2.180.10.10	Mainly Beta	Shell	RHS repeat-associated core	RHS repeat-associated core	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	YenB	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region
B, D	YenC2	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A, C	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family
A, C	IPR022044	Insecticide toxin TcdB middle/C-terminal	Domain
A, C	IPR022045	Insecticide toxin TcdB middle/N-terminal	Domain
B, D	IPR050708	Type VI secretion system VgrG/RHS	Family
B, D	IPR041508	Toxin complex C-like repeat	Repeat
B, D	IPR022385	Rhs repeat-associated core	Domain
B, D	IPR025968	YwqJ-like deaminase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.