Crystal structure of plant protease Deg2
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Big_10 | e4flnC3 | A: a/b three-layered sandwiches | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Big_10 | ECOD (v294.1) |
| C | ANATO | e4flnC6 | A: a/b three-layered sandwiches | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: ANATO | ECOD (v294.1) |
| B | HAMP | e4flnB3 | A: a/b three-layered sandwiches | X: HAMP domain | H: HAMP domain | T: HAMP domain | F: HAMP | ECOD (v294.1) |
| B | V-set | e4flnB12 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (v294.1) |
| A | Avidin | e4flnA2 | A: a/b three-layered sandwiches | X: Globin-like | H: Nucleoside diphosphate kinases | T: Nucleoside diphosphate kinases | F: Avidin | ECOD (v294.1) |
| A | Big_10 | e4flnA3 | A: a/b three-layered sandwiches | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Big_10 | ECOD (v294.1) |
| A | V-set | e4flnA5 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 3.20.190.20 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | CATH (4.3.0) | |
| B | 3.20.190.20 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | CATH (4.3.0) | |
| A | 3.20.190.20 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF17815 | PDZ domain (PDZ_3) | PDZ domain | This entry contains the second PDZ domain from plant peptidases such as Deg2 [1]. This domain is involved in cage assembly. | Domain | |
| PF00089 | Trypsin (Trypsin) | Trypsin | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
| IPR001940 | Peptidase S1C | Family | |
| IPR036034 | PDZ superfamily | Homologous Superfamily | |
| IPR041517 | Protease Do-like, PDZ domain | Domain | |
| IPR046449 | Protease Do-like, PDZ domain superfamily | Homologous Superfamily | |
| IPR043504 | Peptidase_S1_PA_chymotrypsin | Unknown |














