4FLN | pdb_00004fln

Crystal structure of plant protease Deg2


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CBig_10e4flnC3 A: a/b three-layered sandwichesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Big_10ECOD (v294.1)
CANATOe4flnC6 A: a/b three-layered sandwichesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: ANATOECOD (v294.1)
BHAMPe4flnB3 A: a/b three-layered sandwichesX: HAMP domainH: HAMP domainT: HAMP domainF: HAMPECOD (v294.1)
BV-sete4flnB12 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
AAvidine4flnA2 A: a/b three-layered sandwichesX: Globin-likeH: Nucleoside diphosphate kinasesT: Nucleoside diphosphate kinasesF: AvidinECOD (v294.1)
ABig_10e4flnA3 A: a/b three-layered sandwichesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Big_10ECOD (v294.1)
AV-sete4flnA5 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.20.190.20 Alpha Beta Alpha-Beta Barrel N-terminal domain of MutM-like DNA repair proteins CATH (4.3.0)
B3.20.190.20 Alpha Beta Alpha-Beta Barrel N-terminal domain of MutM-like DNA repair proteins CATH (4.3.0)
A3.20.190.20 Alpha Beta Alpha-Beta Barrel N-terminal domain of MutM-like DNA repair proteins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF17815PDZ domain (PDZ_3)PDZ domainThis entry contains the second PDZ domain from plant peptidases such as Deg2 [1]. This domain is involved in cage assembly. Domain
A, B, C
PF00089Trypsin (Trypsin)TrypsinDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Unknown peptide---
D, F
Unknown peptide---
A, B, C
Protease Do-like 2, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage