4F88 | pdb_00004f88

X-ray Crystal Structure of PlyC

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]EUF08512e4f88A1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
E [auth C]EUF08512e4f88C1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
G [auth E]EUF08512e4f88E1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
H [auth F]EUF08512e4f88F1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
K [auth I]EUF08512e4f88I2 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
M [auth K]EUF08512e4f88K2 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
N [auth L]EUF08512e4f88L2 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
O [auth M]EUF08512e4f88M1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
Q [auth O]EUF08512e4f88O1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
R [auth P]EUF08512e4f88P2 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
P [auth N]EUF08512e4f88N1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
L [auth J]EUF08512e4f88J1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
J [auth H]EUF08512e4f88H1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
I [auth G]EUF08512e4f88G1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
F [auth D]EUF08512e4f88D1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
D [auth B]EUF08512e4f88B1 A: a+b three layersX: PlyCB (From Topology)H: PlyCB (From Topology)T: PlyCBF: EUF08512ECOD (1.6)
B [auth 2]CHAPe4f8824 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: CHAPECOD (1.6)
B [auth 2]EUF08540e4f8823 A: a+b complex topologyX: Lysozyme-like (From Homology)H: Lysozyme-likeT: Lysozyme-likeF: EUF08540ECOD (1.6)
A [auth 1]CHAPe4f8812 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: CHAPECOD (1.6)
A [auth 1]EUF08540e4f8811 A: a+b complex topologyX: Lysozyme-like (From Homology)H: Lysozyme-likeT: Lysozyme-likeF: EUF08540ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth A]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
E [auth C]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
G [auth E]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
H [auth F]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
K [auth I]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
M [auth K]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
N [auth L]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
O [auth M]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
Q [auth O]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
R [auth P]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
P [auth N]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
J [auth H]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
I [auth G]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
F [auth D]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
D [auth B]3.30.720.190 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 CATH (4.3.0)
B [auth 2]3.90.1720.60 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) CATH (4.3.0)
A [auth 1]3.90.1720.60 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF20821Streptococcus virus C1, PlyCB (C1_PlyCB)Streptococcus virus C1, PlyCB- Family
A [auth 1],
B [auth 2]		PF05257CHAP domain (CHAP)CHAP domainThis domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78 [1]. ...This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of Swiss:P43675, where it functions as a glutathionylspermidine amidase EC:3.5.1.78 [1]. This domain is found to be the catalytic domain of PlyCA [4]. CHAP is the amidase domain of bifunctional Escherichia coli glutathionylspermidine synthetase/amidase, and it catalyses the hydrolysis of Gsp (glutathionylspermidine) into glutathione and spermidine [5].
Domain
A [auth 1],
B [auth 2]		PF21480PlyCA, N-terminal domain (PlyCA_N)PlyCA, N-terminal domainThis domain is found at the N-terminal end of PlyCA from Streptococcus virus C1, the catalytic subunit of the potent lysin PlyC that is specific for streptococcal species. PlyCA contains three distinct domains. This domain, which folds into a loose b ...This domain is found at the N-terminal end of PlyCA from Streptococcus virus C1, the catalytic subunit of the potent lysin PlyC that is specific for streptococcal species. PlyCA contains three distinct domains. This domain, which folds into a loose bundle of alpha- helices, is considered as a putative glycosyl hydrolase (GyH) domain, as it has similarity to class IV family 19 chitinases [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
PlyCB -
A [auth 1],
B [auth 2]		PlyCA -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR048849Endolysin PlyCFamily
IPR053769PlyC_sfUnknown
A [auth 1],
B [auth 2]		IPR007921CHAP domainDomain
A [auth 1],
B [auth 2]		IPR048974PlyCA, N-terminal domainDomain