4DLO | pdb_00004dlo

Crystal structure of the GAIN and HormR domains of brain angiogenesis inhibitor 3 (BAI3)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	FnI-like domain	8091398	3000979	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ZU5 domain-like	8091397	3002026	SCOP2B (2022-06-29)
A	SCOP2 Family	Full GAIN domain-like	8045674	4004608	SCOP2 (2022-06-29)
A	SCOP2 Family	Hormone receptor domain	8049575	4003045	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ZU5 domain-like	8091397	3002026	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FnI-like domain	8091398	3000979	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ribosomal_L1	e4dloB4	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: RIFT-related	T: double psi	F: Ribosomal_L1	ECOD (v294.1)
A	HRM	e4dloA1	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Hormone receptor domain (HRM, Pfam 02793)	T: Hormone receptor domain (HRM, Pfam 02793)	F: HRM	ECOD (v294.1)
A	GAIN	e4dloA2	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Stabilizer of iron transporter sufD	T: Stabilizer of iron transporter sufD	F: GAIN	ECOD (v294.1)
A	SUFBD	e4dloA3	A: a/b three-layered sandwiches	X: Glycosyl hydrolase domain-like	H: Stabilizer of iron transporter sufD	T: Stabilizer of iron transporter sufD	F: SUFBD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	4.10.1240.10	Few Secondary Structures	Irregular	Hormone receptor fold	GPCR, family 2, extracellular hormone receptor domain	CATH (4.3.0)
B	1.25.40.610	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	2.60.220.50	Mainly Beta	Sandwich	Chondroitinase Ac	Chain A, domain 3	CATH (4.3.0)
A	4.10.1240.10	Few Secondary Structures	Irregular	Hormone receptor fold	GPCR, family 2, extracellular hormone receptor domain	CATH (4.3.0)
A	1.25.40.610	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	2.60.220.50	Mainly Beta	Sandwich	Chondroitinase Ac	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01825	GPCR proteolysis site, GPS, motif (GPS)	GPCR proteolysis site, GPS, motif	-	Motif
A, B	PF02793	Hormone receptor domain (HRM)	Hormone receptor domain	-	Family
A, B	PF16489	AGRL2-4 GAIN subdomain A (GAIN)	AGRL2-4 GAIN subdomain A	This entry describes the GAIN subdomain A primarily found in adhesion G protein-coupled receptors L2-4 (AGRL2-4). It is also found in Latrophilin/CIRL, CELR1, AGRB1-3 and related G-protein -coupled receptors (GPCR). The GAIN domain consists of an N-t ...	This entry describes the GAIN subdomain A primarily found in adhesion G protein-coupled receptors L2-4 (AGRL2-4). It is also found in Latrophilin/CIRL, CELR1, AGRB1-3 and related G-protein -coupled receptors (GPCR). The GAIN domain consists of an N-terminal HormR-like domain (IPR053984), followed by the GAIN domain which consists of a stalk (consisting of subdomains A and B) and a GPS motif (IPR000203), followed by a C-terminal transmembrane region (IPR000832) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Brain-specific angiogenesis inhibitor 3	molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	positive regulation of nervous system development multicellular organismal process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development positive regulation of nervous system development multicellular organismal process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development regulation of multicellular organismal process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality positive regulation of cellular process system development developmental process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process cellular process synapse assembly positive regulation of synapse assembly cellular developmental process cell development developmental maturation generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation cell differentiation neuron development neuron maturation cell maturation cellular component disassembly regulation of synapse pruning cell junction disassembly synapse pruning maintenance of synapse structure cell junction maintenance cellular component maintenance synapse maturation regulation of synapse maturation cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling signal transduction cell communication myoblast fusion cell-cell fusion syncytium formation by cell-cell fusion muscle cell differentiation myotube differentiation muscle structure development striated muscle cell differentiation regulation of neuron projection development cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis dendrite development neuron projection morphogenesis regulation of dendrite morphogenesis regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization regulation of cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of dendrite development regulation of plasma membrane bounded cell projection organization G protein-coupled receptor signaling pathway negative regulation of biological process angiogenesis regulation of vasculature development tube morphogenesis blood vessel development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis negative regulation of multicellular organismal process behavior system process learning learning or memory nervous system process motor learning cognition	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region synaptic cleft extracellular region cerebellar climbing fiber to Purkinje cell synapse glutamatergic synapse excitatory synapse asymmetric, glutamatergic, excitatory synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR017983	GPCR, family 2, secretin-like, conserved site	Conserved Site
A, B	IPR036445	GPCR family 2, extracellular hormone receptor domain superfamily	Homologous Superfamily
A, B	IPR000832	GPCR, family 2, secretin-like	Family
A, B	IPR000203	GPS motif	Conserved Site
A, B	IPR000859	CUB domain	Domain
A, B	IPR017981	GPCR, family 2-like, 7TM	Domain
A, B	IPR008077	GPCR, family 2, brain-specific angiogenesis inhibitor	Family
A, B	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
A, B	IPR001879	GPCR, family 2, extracellular hormone receptor domain	Domain
A, B	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
A, B	IPR043838	Adhesion G protein-coupled receptor B, N-terminal domain	Domain
A, B	IPR032471	AGRL2-4 , GAIN subdomain A	Domain
A, B	IPR046338	GAIN domain superfamily	Homologous Superfamily
A, B	IPR057244	GAIN, subdomain B	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O60242	astrocytic tumor large cell medulloblastoma malignant glioma pancreatic intraductal papillary-mucinous carcinoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor lung adenocarcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm glioblastoma malignant ependymoma non-small cell lung carcinoma primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.