4CMY | pdb_00004cmy

Chlorobium tepidum Ferritin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
V	d4cmyv_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
X	d4cmyx_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
W	d4cmyw_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
U	d4cmyu_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
T	d4cmyt_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
S	d4cmys_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
R	d4cmyr_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
Q	d4cmyq_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
P	d4cmyp_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
O	d4cmyo_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
N	d4cmyn_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
M	d4cmym_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
L	d4cmyl_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
K	d4cmyk_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
J	d4cmyj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
I	d4cmyi_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
H	d4cmyh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
G	d4cmyg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
F	d4cmyf_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
E	d4cmye_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
D	d4cmyd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
C	d4cmyc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
B	d4cmyb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)
A	d4cmya_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Chlorobaculum tepidum ) [TaxId: 1097 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8063898	3001658	SCOP2B (2022-06-29)
A	SCOP2 Family	Ferritin	8063897	4000839	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8063898	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V	Peptidase_S8	e4cmyV1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
X	Peptidase_S8	e4cmyX1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
W	Peptidase_S8	e4cmyW1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
U	Peptidase_S8	e4cmyU1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
T	Peptidase_S8	e4cmyT1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
S	Peptidase_S8	e4cmyS1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
R	Peptidase_S8	e4cmyR1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
Q	Peptidase_S8	e4cmyQ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
P	Peptidase_S8	e4cmyP1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
O	Peptidase_S8	e4cmyO1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
N	Peptidase_S8	e4cmyN1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
M	Peptidase_S8	e4cmyM1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
L	Peptidase_S8	e4cmyL1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
K	Peptidase_S8	e4cmyK1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
J	Peptidase_S8	e4cmyJ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
I	Peptidase_S8	e4cmyI1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
H	Peptidase_S8	e4cmyH1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
G	Peptidase_S8	e4cmyG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
F	Peptidase_S8	e4cmyF1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
E	Peptidase_S8	e4cmyE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
D	Peptidase_S8	e4cmyD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
C	Peptidase_S8	e4cmyC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
B	Peptidase_S8	e4cmyB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)
A	Peptidase_S8	e4cmyA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
X	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
V	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
V	FERRITIN	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity identical protein binding protein binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	FERRITIN	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity identical protein binding protein binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
V	IPR009040	Ferritin-like diiron domain	Domain
V	IPR041719	Ferritin, prokaryotic-type	Family
V	IPR012347	Ferritin-like	Homologous Superfamily
V	IPR009078	Ferritin-like superfamily	Homologous Superfamily
V	IPR008331	Ferritin/DPS domain	Domain
V	IPR001519	Ferritin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR041719	Ferritin, prokaryotic-type	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, W, X	IPR001519	Ferritin	Family