4BKF
crystal structure of the human EphA4 ectodomain in complex with human ephrinB3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | galactose-binding domain-like | 8082070 | 3000087 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | galactose-binding domain-like | 8082070 | 3000087 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cupredoxins | 8061911 | 3000886 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Ephrin ectodomain | 8061910 | 4002092 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Cupredoxins | 8061911 | 3000886 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ephrin_lbd | e4bkfA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Ephrin_lbd | ECOD (1.6) |
A | fn3 | e4bkfA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3 | ECOD (1.6) |
A | fn3_9 | e4bkfA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_9 | ECOD (1.6) |
A | TNFR_c6 | e4bkfA4 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: TNFR_c6 | ECOD (1.6) |
A | KOG0196 | e4bkfA5 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: Complement control module/SCR domain | F: KOG0196 | ECOD (1.6) |
B | Ephrin_lbd | e4bkfB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: Ephrin_lbd | ECOD (1.6) |
B | fn3 | e4bkfB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3 | ECOD (1.6) |
B | fn3_9 | e4bkfB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_9 | ECOD (1.6) |
B | KOG0196 | e4bkfB2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: KOG0196 | ECOD (1.6) |
D | Ephrin | e4bkfD1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Ephrin | ECOD (1.6) |
C | Ephrin | e4bkfC1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Ephrin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01404 | Ephrin receptor ligand binding domain (Ephrin_lbd) | Ephrin receptor ligand binding domain | The Eph receptors, which bind to ephrins Pfam:PF00812 are a large family of receptor tyrosine kinases. This family represents the amino terminal domain which binds the ephrin ligand [1]. | Domain | |
PF00041 | Fibronectin type III domain (fn3) | Fibronectin type III domain | - | Domain | |
PF07699 | Tyrosine-protein kinase ephrin type A/B receptor-like (Ephrin_rec_like) | Tyrosine-protein kinase ephrin type A/B receptor-like | This family has repeats of a region rich in cysteines. It is found in various ephrin type A and B receptors, which have tyrosine kinase activity. | Domain | |
PF00812 | Ephrin (Ephrin) | Ephrin | - | Domain |