4BJ8 | pdb_00004bj8

Zebavidin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4bj8p_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
O	d4bj8o1	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
O	d4bj8o2	Artifacts	Tags	Tags	Tags	N-terminal Tags	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
N	d4bj8n_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
M	d4bj8m_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
L	d4bj8l_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
K	d4bj8k_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
J	d4bj8j_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
I	d4bj8i_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
H	d4bj8h_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
G	d4bj8g_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
F	d4bj8f_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
E	d4bj8e_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
D	d4bj8d_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
C	d4bj8c_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
B	d4bj8b_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)
A	d4bj8a_	All beta proteins	Streptavidin-like	Avidin/streptavidin	automated matches	automated matches	ZEBRAFISH (Danio rerio ) [TaxId: 7955 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2B (2022-06-29)
A	SCOP2 Family	Avidin/streptavidin	8070809	4002597	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Avidin/streptavidin	8070810	3001465	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	SLT_beta	e4bj8P1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
O	SLT_beta	e4bj8O1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
N	SLT_beta	e4bj8N1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
M	SLT_beta	e4bj8M1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
L	SLT_beta	e4bj8L1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
K	SLT_beta	e4bj8K1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
J	SLT_beta	e4bj8J1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
I	SLT_beta	e4bj8I1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
H	SLT_beta	e4bj8H1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
G	SLT_beta	e4bj8G1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
F	SLT_beta	e4bj8F1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
E	SLT_beta	e4bj8E1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
D	SLT_beta	e4bj8D1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
C	SLT_beta	e4bj8C1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
B	SLT_beta	e4bj8B1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
A	SLT_beta	e4bj8A1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
O	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
N	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
M	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
L	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
K	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
J	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
I	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
H	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
G	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
F	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
E	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
D	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
C	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
B	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)
A	2.40.128.30	Mainly Beta	Beta Barrel	Lipocalin	Avidin-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	ZEBAVIDIN	biotin binding organic acid binding binding vitamin binding ion binding anion binding carboxylic acid binding heterocyclic compound binding monocarboxylic acid binding small molecule binding sulfur compound binding	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036896	Avidin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR051764	Avidin/Streptavidin-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005468	Avidin/streptavidin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR005469	Avidin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.