4B30 | pdb_00004b30

Structure of the mutant V44A of the fluorescent protein KillerRed

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4b30b_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Anthomedusae sp. DC-2005 ) [TaxId: 328397 ],	SCOPe (2.08)
A	d4b30a_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Anthomedusae sp. DC-2005 ) [TaxId: 328397 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	GFP	e4b30B1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)
A	GFP	e4b30A1	A: beta barrels	X: GFP-like (From Topology)	H: GFP-like (From Topology)	T: GFP-like	F: GFP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain
A	PF01353	Green fluorescent protein (GFP)	Green fluorescent protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	KILLERRED	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
A	KILLERRED	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR000786	Green fluorescent protein, GFP	Family
B	IPR011584	Green fluorescent protein-related	Family
B	IPR009017	Green fluorescent protein	Homologous Superfamily
A	IPR000786	Green fluorescent protein, GFP	Family
A	IPR011584	Green fluorescent protein-related	Family
A	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CRQ	Parent Component: GLN, TYR, GLY RESID: AA0189 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197
B	CSO	Parent Component: CYS RESID: AA0189 , AA0205 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197 , L-cysteine sulfenic acid MOD:00210
A	CRQ	Parent Component: GLN, TYR, GLY RESID: AA0189 , AA0205 , AA0189 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197 , L-cysteine sulfenic acid MOD:00210 , 2-imino-glutamine 5-imidazolinone glycine MOD:00197
A	CSO	Parent Component: CYS RESID: AA0189 , AA0205 , AA0189 , AA0205 PSI-MOD : 2-imino-glutamine 5-imidazolinone glycine MOD:00197 , L-cysteine sulfenic acid MOD:00210 , 2-imino-glutamine 5-imidazolinone glycine MOD:00197 , L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.