Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARlmMe4aukA2 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin-like domain in ThiI (From Topology)T: Ferredoxin-like domain in ThiIF: RlmMECOD (1.6)
APRK11760e4aukA3 A: a+b two layersX: THUMP domain-like (From Topology)H: THUMP domain-like (From Topology)T: THUMP domain-likeF: PRK11760ECOD (1.6)
AFtsJe4aukA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FtsJECOD (1.6)
BRlmMe4aukB2 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin-like domain in ThiI (From Topology)T: Ferredoxin-like domain in ThiIF: RlmMECOD (1.6)
BPRK11760e4aukB3 A: a+b two layersX: THUMP domain-like (From Topology)H: THUMP domain-like (From Topology)T: THUMP domain-likeF: PRK11760ECOD (1.6)
BFtsJe4aukB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FtsJECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.2810 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
A3.30.2300.20 Alpha Beta 2-Layer Sandwich THUMP fold CATH (4.3.0)
A3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
B3.30.70.2810 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
B3.30.2300.20 Alpha Beta 2-Layer Sandwich THUMP fold CATH (4.3.0)
B3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF18125RlmM ferredoxin-like domain (RlmM_FDX)RlmM ferredoxin-like domainThis domain is found in Ribosomal methyltransferase RlmM (YdgE) present in E. coli. RlmM catalyzes the S-adenosyl methionine (AdoMet)-dependent 2'O methylation of C2498 in 23S ribosomal RNA. The domain is ferredoxin-like and forms part of the THUMP d ...This domain is found in Ribosomal methyltransferase RlmM (YdgE) present in E. coli. RlmM catalyzes the S-adenosyl methionine (AdoMet)-dependent 2'O methylation of C2498 in 23S ribosomal RNA. The domain is ferredoxin-like and forms part of the THUMP domain which binds RNA. THUMP domains typically have low sequence similarity [1].
Domain
A, B
PF01728FtsJ-like methyltransferase (FtsJ)FtsJ-like methyltransferase- Family
A, B
PF21239Ribosomal RNA large subunit methyltransferase M, N-terminal (RLMM_N)Ribosomal RNA large subunit methyltransferase M, N-terminalThis is the THUMP-like domain of Ribosomal RNA large subunit methyltransferase M (RLMM), adjacent the ferredoxin-like domain (Pfam:PF18125), which together constitutes the N-terminal domain [1]. RlmM specifically catalyses the 2'-O-methylation of nuc ...This is the THUMP-like domain of Ribosomal RNA large subunit methyltransferase M (RLMM), adjacent the ferredoxin-like domain (Pfam:PF18125), which together constitutes the N-terminal domain [1]. RlmM specifically catalyses the 2'-O-methylation of nucleotide C2498 in the peptidyl transferase loop of 23S rRNA [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
CSS Parent Component: CYS

RESIDAA0269

PSI-MOD :  L-cysteine persulfide MOD:00274