4A34 | pdb_00004a34

Crystal structure of the fucose mutarotase in complex with L-fucose from Streptococcus pneumoniae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4a34a_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
B	d4a34b_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
C	d4a34c_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
D	d4a34d_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
E	d4a34e_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
F	d4a34f_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
G	d4a34g_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
H	d4a34h_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
I	d4a34i_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
J	d4a34j_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
K	d4a34k_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
L	d4a34l_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
N	d4a34n_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
O	d4a34o_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
P	d4a34p_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
Q	d4a34q_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
S	d4a34s_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
T	d4a34t_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
R	d4a34r_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)
M	d4a34m_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Streptococcus pneumoniae TIGR4 ) [TaxId: 170187 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	RbsD-like	8060324	4001142	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RbsD-like	8060325	3000903	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	RbsD-like	8060325	3000903	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FHA	e4a34A1	A: a/b three-layered sandwiches	X: Cystatin-like	H: Cystatin/monellin	T: Cystatin/monellin	F: FHA	ECOD (v294.1)
B	PNP_UDP_1	e4a34B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
C	PNP_UDP_1	e4a34C1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
D	PNP_UDP_1	e4a34D1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
E	PNP_UDP_1	e4a34E1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
F	PNP_UDP_1	e4a34F1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
G	PNP_UDP_1	e4a34G1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
H	PNP_UDP_1	e4a34H1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
I	PNP_UDP_1	e4a34I1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
J	PNP_UDP_1	e4a34J1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
K	PNP_UDP_1	e4a34K1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
L	PNP_UDP_1	e4a34L1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
N	PNP_UDP_1	e4a34N1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
O	PNP_UDP_1	e4a34O1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
P	PNP_UDP_1	e4a34P1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
Q	PNP_UDP_1	e4a34Q1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
S	PNP_UDP_1	e4a34S1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
T	PNP_UDP_1	e4a34T1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
R	PNP_UDP_1	e4a34R1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)
M	PNP_UDP_1	e4a34M1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: PNP_UDP_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
B	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
C	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
D	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
E	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
F	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
G	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
H	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
I	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
J	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
K	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
L	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
N	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
O	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
P	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
Q	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
S	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
T	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
R	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
M	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF05025	RbsD / FucU transport protein family (RbsD_FucU)	RbsD / FucU transport protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	RBSD/FUCU TRANSPORT PROTEIN FAMILY PROTEIN	isomerase activity D-ribose pyranase activity catalytic activity intramolecular transferase activity L-fucose mutarotase activity racemase and epimerase activity racemase and epimerase activity, acting on carbohydrates and derivatives binding fucose binding monosaccharide binding carbohydrate binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process metabolic process cellular process primary metabolic process fucose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR023750	RbsD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR007721	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR050443	RbsD/FucU L-fucose mutarotase	Family