3SOO | pdb_00003soo

Crystal structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from HOMO SAPIENS at 2.73 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	L1 transposable element C-terminal dsRBD domain-like	8047048	4005420	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	L1ORF1p CTD-like	8052164	3002096	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	MCR_gamma	e3sooC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: MCR_gamma	ECOD (v294.1)
B	MCR_gamma	e3sooB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: MCR_gamma	ECOD (v294.1)
A	Glyco_hydro_3	e3sooA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Glyco_hydro_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)
B	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)
A	3.30.250.20	Alpha Beta	2-Layer Sandwich	Rec A Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF17490	L1 transposable element dsRBD-like domain (Tnp_22_dsRBD)	L1 transposable element dsRBD-like domain	This entry represents the double stranded RNA-binding-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	LINE-1 type transposase domain-containing protein 1	RNA binding binding nucleic acid binding single-stranded RNA binding	cellular process transposition retrotransposition	protein-containing complex ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR042566	L1 transposable element, C-terminal domain	Homologous Superfamily
A, B, C	IPR035300	L1 transposable element, dsRBD-like domain	Domain
A, B, C	IPR043636	L1 transposable element, RRM domain	Domain
A, B, C	IPR004244	Transposase, L1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q5T7N2	colorectal cancer Crohn disease ulcerative colitis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
A, B, C	MSE	Parent Component: MET RESID: AA0075

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.