3MVK

The Crystal Structure of FucU from Bifidobacterium longum to 1.65A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3mvka_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
B	d3mvkb_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
C	d3mvkc_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
D	d3mvkd_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
E	d3mvke_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
F	d3mvkf_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
G	d3mvkg_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
H	d3mvkh_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
I	d3mvki_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)
J	d3mvkj_	Alpha and beta proteins (a/b)	RbsD-like	RbsD-like	automated matches	automated matches	(Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 ) [TaxId: 391904 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
G	SCOP2 Family	RbsD-like	8060318	4001142	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	RbsD-like	8060319	3000903	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RbsD-like	8060319	3000903	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RbsD_FucU	e3mvkA1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
B	RbsD_FucU	e3mvkB1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
C	RbsD_FucU	e3mvkC1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
D	RbsD_FucU	e3mvkD1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
E	RbsD_FucU	e3mvkE1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
F	RbsD_FucU	e3mvkF1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
G	RbsD_FucU	e3mvkG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
H	RbsD_FucU	e3mvkH1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
I	RbsD_FucU	e3mvkI1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)
J	RbsD_FucU	e3mvkJ1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: RbsD_FucU	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
B	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
C	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
D	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
E	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
F	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
G	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
H	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
I	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)
J	3.40.1650.10	Alpha Beta	3-Layer(aba) Sandwich	RbsD-like fold	RbsD-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF05025	RbsD / FucU transport protein family (RbsD_FucU)	RbsD / FucU transport protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	protein FucU	isomerase activity D-ribose pyranase activity catalytic activity intramolecular transferase activity binding monosaccharide binding carbohydrate binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process organic substance metabolic process small molecule metabolic process metabolic process primary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR023750	RbsD-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR007721	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.