3WHS | pdb_00003whs

Crystal structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF4170	e3whsB1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: DUF4170	ECOD (v294.1)
A	DUF4170	e3whsA1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: DUF4170	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.60.20.40	Alpha Beta	4-Layer Sandwich	Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1	Gamma-glutamyltranspeptidase, small (S) subunit	CATH (4.3.0)
A	1.10.246.130	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain
A	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Gamma-glutamyltranspeptidase small chain	cysteine-type peptidase activity peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity gamma-glutamyl-peptidase activity catalytic activity glutathione gamma-glutamate hydrolase threonine-type peptidase activity	glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process biosynthetic process glutathione biosynthetic process metabolic process cellular process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process proteolysis primary metabolic process glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process biosynthetic process glutathione biosynthetic process metabolic process cellular process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process sulfur compound catabolic process glutathione catabolic process catabolic process modified amino acid catabolic process	cellular anatomical structure extracellular region
A	Gamma-glutamyltranspeptidase large chain	cysteine-type peptidase activity peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity gamma-glutamyl-peptidase activity catalytic activity glutathione gamma-glutamate hydrolase threonine-type peptidase activity	glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process biosynthetic process glutathione biosynthetic process metabolic process cellular process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process proteolysis primary metabolic process glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process biosynthetic process glutathione biosynthetic process metabolic process cellular process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process sulfur compound catabolic process glutathione catabolic process catabolic process modified amino acid catabolic process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
B	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
B	IPR000101	Gamma-glutamyltranspeptidase	Family
B	IPR051792	Gamma-glutamyltransferase, bacteria	Family
B	IPR043138	Gamma-glutamyltranspeptidase, large subunit	Homologous Superfamily
B	IPR055262	Gamma-glutamyltranspeptidase, conserved site	Conserved Site
A	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
A	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A	IPR000101	Gamma-glutamyltranspeptidase	Family
A	IPR051792	Gamma-glutamyltransferase, bacteria	Family
A	IPR043138	Gamma-glutamyltranspeptidase, large subunit	Homologous Superfamily
A	IPR055262	Gamma-glutamyltranspeptidase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.