3W6V | pdb_00003w6v

Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HTH_18	e3w6vA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_18	ECOD (1.6)
A	HTH_AraC	e3w6vA2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: HTH_AraC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.60	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Homeodomain-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12833	Helix-turn-helix domain (HTH_18)	Helix-turn-helix domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	DNA (5'-D(APGPGPTPTPGPGPCPGPGPGPTPTPCPAPC)-3')	-	-	-
B	DNA (5'-D(CPTPGPTPGPAPAPCPCPCPGPCPCPAPAPC)-3')	-	-	-
A	AdpA	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR029062	Class I glutamine amidotransferase-like	Homologous Superfamily
A	IPR002818	DJ-1/PfpI	Domain
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR018060	AraC-like, DNA binding HTH domain	Domain
A	IPR052158	Isonitrile Hydratase and Quaternary Amine Regulator	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.