3TND | pdb_00003tnd

Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HUNK_F_TYPEe3tndH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: AbrBF: UNK_F_TYPEECOD (1.6)
FUNK_F_TYPEe3tndF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: AbrBF: UNK_F_TYPEECOD (1.6)
GPINe3tndG1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: PIN domain-likeF: PINECOD (1.6)
EPINe3tndE1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: PIN domain-likeF: PINECOD (1.6)
CPINe3tndC1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: PIN domain-likeF: PINECOD (1.6)
APINe3tndA1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: PIN domain-likeF: PINECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.10.260.10 Mainly Beta Ribbon Pemi-like Protein 1 Chain: DCATH (4.3.0)
G3.40.50.1010 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold 5'-nucleaseCATH (4.3.0)
E3.40.50.1010 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold 5'-nucleaseCATH (4.3.0)
C3.40.50.1010 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold 5'-nucleaseCATH (4.3.0)
A3.40.50.1010 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold 5'-nucleaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H
PF04014Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)Antidote-toxin recognition MazE, bacterial antitoxinAbrB-like is a family of small proteins that operate in conjunction with a cognate toxin molecule. The commonly attributed role of toxin-antitoxin systems is to maintain low-copy number plasmids from one generation to the next. Such gene-pairs are al ...AbrB-like is a family of small proteins that operate in conjunction with a cognate toxin molecule. The commonly attributed role of toxin-antitoxin systems is to maintain low-copy number plasmids from one generation to the next. Such gene-pairs are also found on chromosomes and to be associated with a number of biological functions such as: reduction of protein synthesis, gene regulation and retardation of cell growth under nutritional stress [1]. This family includes proteins from a number of different pairings, eg MazE, AbrB, VapB [2], PhoU, PemI-like and SpoVT. MazE is the antidote to the toxin MazF of E. coli. MazE-MazF in E. coli is a regulated prokaryotic chromosomal addiction module. MazE antidote is degraded by the ClpPA protease of the bacterial proteasome. MazE-MazF is thought to play a role in programmed cell death when cells suffer nutrient deprivation [3], and MazE-MazF modules have also been implicated in the bacteriostatic effects of other addiction modules [3].
Domain
A, C, E, G
PF01850PIN domain (PIN)PIN domainDomain