3TND
Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PIN | e3tndA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
C | PIN | e3tndC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
E | PIN | e3tndE1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
G | PIN | e3tndG1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PIN | ECOD (1.6) |
F | UNK_F_TYPE | e3tndF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
H | UNK_F_TYPE | e3tndH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: AbrB | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
C | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
E | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
G | 3.40.50.1010 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | 5'-nuclease | CATH (4.3.0) |
B | 2.10.260.10 | Mainly Beta | Ribbon | Pemi-like Protein 1 | Chain: D | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
tRNA(fMet)-specific endonuclease VapC |
| - | - | |
Antitoxin VapB | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002716 | PIN domain | Domain | |
IPR029060 | PIN-like domain superfamily | Homologous Superfamily | |
IPR022907 | VapC family | Family | |
IPR050556 | Type II toxin-antitoxin system RNase | Family | |
IPR051734 | Type II toxin-antitoxin VapB antitoxins | Family | |
IPR047976 | Antitoxin VapB2-like | Family | |
IPR037914 | SpoVT-AbrB domain superfamily | Homologous Superfamily | |
IPR007159 | SpoVT-AbrB domain | Domain |