3TIX
Crystal structure of the Chp1-Tas3 complex core
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22378 | e3tixA1 | A: alpha bundles | X: Tas3 N-terminal domain (From Topology) | H: Tas3 N-terminal domain (From Topology) | T: Tas3 N-terminal domain | F: PF22378 | ECOD (1.6) |
A | PF11976 | e3tixA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF11976 | ECOD (1.6) |
C | PF22378 | e3tixC1 | A: alpha bundles | X: Tas3 N-terminal domain (From Topology) | H: Tas3 N-terminal domain (From Topology) | T: Tas3 N-terminal domain | F: PF22378 | ECOD (1.6) |
C | PF11976 | e3tixC2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF11976 | ECOD (1.6) |
B | PF22380 | e3tixB2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: SPOC domain | F: PF22380 | ECOD (1.6) |
B | PF21484 | e3tixB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF21484 | ECOD (1.6) |
B | F_UNCLASSIFIED | e3tixB3 | A: a/b three-layered sandwiches | X: Chromo domain-containing protein 1 (Chp1) domain II (From Topology) | H: Chromo domain-containing protein 1 (Chp1) domain II (From Topology) | T: Chromo domain-containing protein 1 (Chp1) domain II | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF22380 | e3tixD1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: SPOC domain | F: PF22380 | ECOD (1.6) |
D | PF21484 | e3tixD3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF21484 | ECOD (1.6) |
D | F_UNCLASSIFIED | e3tixD2 | A: a/b three-layered sandwiches | X: Chromo domain-containing protein 1 (Chp1) domain II (From Topology) | H: Chromo domain-containing protein 1 (Chp1) domain II (From Topology) | T: Chromo domain-containing protein 1 (Chp1) domain II | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
A | 6.10.140.1690 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
C | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 6.10.140.1690 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 2.40.290.20 | Mainly Beta | Beta Barrel | Ku70 | Chain: A | CATH (4.3.0) |
B | 3.40.1010.30 | Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase | domain 1 | CATH (4.3.0) |
B | 3.40.50.11490 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
D | 2.40.290.20 | Mainly Beta | Beta Barrel | Ku70 | Chain: A | CATH (4.3.0) |
D | 3.40.1010.30 | Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase | domain 1 | CATH (4.3.0) |
D | 3.40.50.11490 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21484 | Chromo domain-containing protein 1-like, PIN domain (Chp1-like_PIN) | Chromo domain-containing protein 1-like, PIN domain | This domain is found at the C-terminal end of Chromo domain- containing protein 1 from Schizosaccharomyces pombe (Chp1) and similar proteins predominantly found in yeast. Chp1 is a component of the RNA-induced initiation of Transcriptional Gene Silen ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049112 | Tas3, C-terminal helical domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR022617 | Rad60/SUMO-like domain | Domain | |
IPR048709 | Chop1, PIN domain | Domain | |
IPR023780 | Chromo domain | Domain | |
IPR016197 | Chromo-like domain superfamily | Homologous Superfamily | |
IPR023779 | Chromo domain, conserved site | Conserved Site | |
IPR000953 | Chromo/chromo shadow domain | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |