3T79 | pdb_00003t79

Ndc10: a platform for inner kinetochore assembly in budding yeast

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth D]	SCOP2B Superfamily	lambda integrase clamp domain-like	8053776	3000550	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8053767	3001127	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8053767	3001127	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	lambda integrase clamp domain-like	8053776	3000550	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	N6_Mtase	e3t79D1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: N6_Mtase	ECOD (v294.1)
E [auth A]	Amino_oxidase	e3t79A2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Amino_oxidase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth D]	1.10.150.540	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
F [auth D]	1.10.443.20	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
E [auth A]	1.10.150.540	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E [auth A]	1.10.443.20	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth A], F [auth D]	PF16787	Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II)	Centromere DNA-binding protein complex CBF3 subunit, domain 2	NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth A], F [auth D]	KLLA0E03807p	DNA binding binding nucleic acid binding	-	-
D [auth F]	DNA (5'-D(PAPAPAPAPAPTPTPTPTPAPTPAPAPAP*T)-3')	-	-	-
C [auth E]	DNA (5'-D(PTPAPAPTPTPTPAPTPAPAPAPAPTPT)-3')	-	-	-
B [auth C]	DNA (5'-D(PAPAPAPTPTPTPTPAPTPAPAPAPTPTP*A)-3')	-	-	-
A [auth B]	DNA (5'-D(PTPTPAPAPTPTPTPAPTPAPAPAPAPTP*T)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth A], F [auth D]	IPR038279	Ndc10, domain 2 superfamily	Homologous Superfamily
E [auth A], F [auth D]	IPR031872	Ndc10, domain 2	Domain
E [auth A], F [auth D]	IPR022210	Transcription activator GCR1-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.