3SBX | pdb_00003sbx

Crystal structure of a putative uncharacterized protein from Mycobacterium marinum bound to adenosine 5'-monophosphate AMP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3sbxh_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
G	d3sbxg_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
F	d3sbxf_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
E	d3sbxe_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
D	d3sbxd_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
C	d3sbxc_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
B	d3sbxb_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)
A	d3sbxa_	Alpha and beta proteins (a/b)	MCP/YpsA-like	MCP/YpsA-like	automated matches	automated matches	(Mycobacterium marinum M ) [TaxId: 216594 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2B (2022-06-29)
A	SCOP2 Family	MoCo carrier protein-like	8061798	4001074	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MCP/YpsA-like	8061799	3000672	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	YjeF_N	e3sbxH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
G	YjeF_N	e3sbxG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
F	YjeF_N	e3sbxF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
E	YjeF_N	e3sbxE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
D	YjeF_N	e3sbxD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
C	YjeF_N	e3sbxC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
B	YjeF_N	e3sbxB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: YjeF_N	ECOD (v294.1)
A	Lysine_decarbox	e3sbxA1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F: Lysine_decarbox	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
G	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
F	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF03641	Possible lysine decarboxylase (Lysine_decarbox)	Possible lysine decarboxylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative uncharacterized protein	cytokinin riboside 5'-monophosphate phosphoribohydrolase activity hydrolase activity, acting on glycosyl bonds hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	cytokinin metabolic process regulation of hormone levels biological regulation cytokinin biosynthetic process hormone metabolic process amine metabolic process biosynthetic process metabolic process cellular process regulation of biological quality hormone biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005269	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR031100	LOG family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.