3S97 | pdb_00003s97

PTPRZ CNTN1 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3s97d1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3s97c1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3s97b_	All beta proteins	Carbonic anhydrase	Carbonic anhydrase	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3s97a_	All beta proteins	Carbonic anhydrase	Carbonic anhydrase	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Carbonic anhydrase	8065109	3001672	SCOP2B (2022-06-29)
A	SCOP2 Family	Carbonic anhydrase	8065108	4002732	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Carbonic anhydrase	8065109	3001672	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ig_2	e3s97D3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Ig_2	ECOD (v294.1)
C	Ig_2	e3s97C3	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Ig_2	ECOD (v294.1)
B	Ion_trans_2	e3s97B1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Ion_trans_2	ECOD (v294.1)
A	Ribosomal_L13	e3s97A1	A: a/b three-layered sandwiches	X: Cystatin-like	H: Cystatin/monellin	T: Cystatin/monellin	F: Ribosomal_L13	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.10.200.10	Alpha Beta	Roll	Carbonic Anhydrase II	Alpha carbonic anhydrase	CATH (4.3.0)
A	3.10.200.10	Alpha Beta	Roll	Carbonic Anhydrase II	Alpha carbonic anhydrase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF13927	Immunoglobulin domain (Ig_3)	Immunoglobulin domain	This family contains immunoglobulin-like domains.	Domain
A, B	PF00194	Eukaryotic-type carbonic anhydrase (Carb_anhydrase)	Eukaryotic-type carbonic anhydrase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Contactin-1	binding carbohydrate binding cell adhesion molecule binding protein binding cell adhesion mediator activity cell-cell adhesion mediator activity	multicellular organismal process cellular developmental process cellular component assembly involved in morphogenesis cell development glial cell development myelin assembly cellular component organization cellular component biogenesis multicellular organism development neurogenesis cellular anatomical entity morphogenesis cellular component assembly gliogenesis axon ensheathment ensheathment of neurons multicellular organismal process cellular developmental process cellular component assembly involved in morphogenesis cell development glial cell development myelin assembly cellular component organization cellular component biogenesis multicellular organism development neurogenesis cellular anatomical entity morphogenesis cellular component assembly gliogenesis axon ensheathment ensheathment of neurons cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process oligodendrocyte development central nervous system myelination nervous system development central nervous system myelin formation myelination anatomical structure morphogenesis axon ensheathment in central nervous system central nervous system development oligodendrocyte differentiation glial cell differentiation anatomical structure formation involved in morphogenesis cellular process head development animal organ development brain development behavior locomotory behavior regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cerebellum development metencephalon development hindbrain development regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cell projection organization neuron projection development neuron differentiation positive regulation of neuron projection development positive regulation of cell projection organization plasma membrane bounded cell projection organization regulation of cell projection organization generation of neurons neuron development regulation of plasma membrane bounded cell projection organization axonogenesis plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance cell adhesion regulation of localization transport regulation of transport regulation of monoatomic ion transport regulation of sodium ion transport establishment of localization metal ion transport positive regulation of sodium ion transport localization positive regulation of transport positive regulation of monoatomic ion transport monoatomic ion transport monoatomic cation transport regulation of metal ion transport sodium ion transport cell-cell adhesion cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell communication Notch signaling pathway signal transduction	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle presynapse presynaptic membrane glutamatergic synapse side of membrane axon cell projection neuron projection plasma membrane bounded cell projection
A, B	Receptor-type tyrosine-protein phosphatase zeta	phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cell adhesion molecule binding phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding	developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of cellular process regulation of developmental process regulation of myelination biological regulation nervous system development regulation of nervous system development myelination multicellular organism development axon ensheathment ensheathment of neurons anatomical structure development developmental process multicellular organismal process regulation of biological process regulation of multicellular organismal development regulation of cellular process regulation of developmental process regulation of myelination biological regulation nervous system development regulation of nervous system development myelination multicellular organism development axon ensheathment ensheathment of neurons anatomical structure development cellular process regulation of multicellular organismal process system development central nervous system development cellular developmental process neurogenesis gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process oligodendrocyte progenitor proliferation cell population proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of oligodendrocyte progenitor proliferation regulation of neural precursor cell proliferation neuron apoptotic process negative regulation of neuron apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death regulation of neuron apoptotic process cellular response to stimulus response to stimulus signaling signal transduction cell communication axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis plasma membrane bounded cell projection organization axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development behavior system process learning or memory nervous system process cognition peptidyl-tyrosine dephosphorylation positive regulation of nervous system development positive regulation of biological process regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis positive regulation of gliogenesis regulation of cell development positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of cellular process positive regulation of oligodendrocyte differentiation positive regulation of cell development regulation of glial cell differentiation positive regulation of glial cell differentiation positive regulation of multicellular organismal process regulation of oligodendrocyte differentiation hemopoiesis hematopoietic progenitor cell differentiation	cell periphery cellular anatomical structure plasma membrane membrane perisynaptic extracellular matrix extracellular matrix synapse-associated extracellular matrix external encapsulating structure extracellular region perineuronal net specialized extracellular matrix synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR047102	Contactin-1/2, immunoglobulin domain 2	Domain
C, D	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C, D	IPR003598	Immunoglobulin subtype 2	Domain
C, D	IPR047101	Contactin-1, immunoglobulin domain 6	Domain
C, D	IPR036992	Contactin-1, immunoglobulin domain 1	Domain
C, D	IPR003599	Immunoglobulin domain subtype	Domain
C, D	IPR013098	Immunoglobulin I-set	Domain
C, D	IPR003961	Fibronectin type III	Domain
C, D	IPR013151	Immunoglobulin-like beta-sandwich domain	Domain
C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C, D	IPR047100	Contactin-1, Ig-like domain 3	Domain
C, D	IPR007110	Immunoglobulin-like domain	Domain
C, D	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
A, B	IPR001148	Alpha carbonic anhydrase domain	Domain
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR041887	Receptor-type tyrosine-protein phosphatase, carbonic anhydrase domain	Domain
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR003961	Fibronectin type III	Domain
A, B	IPR036398	Alpha carbonic anhydrase domain superfamily	Homologous Superfamily
A, B	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR050348	Protein-Tyrosine Phosphatase	Family
A, B	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: Q12860	Compton-North congenital myopathy osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor adrenal cortex adenoma arthrogryposis atypical teratoid rhabdoid tumor interstitial cystitis malignant colon neoplasm medulloblastoma ovarian cancer Pick disease progressive supranuclear palsy adrenal cortex carcinoma astrocytic tumor Compton-North congenital myopathy osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor adrenal cortex adenoma arthrogryposis atypical teratoid rhabdoid tumor interstitial cystitis malignant colon neoplasm medulloblastoma ovarian cancer Pick disease progressive supranuclear palsy adrenal cortex carcinoma astrocytic tumor breast cancer Congenital myopathy (disorder) large cell medulloblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer subependymal giant cell astrocytoma Alzheimer disease atopic eczema colorectal cancer glioblastoma lung cancer malignant glioma
A, B	Pharos: P23471	bagassosis pneumoconiosis pilocytic astrocytoma schizophrenia astrocytic tumor breast carcinoma glioblastoma Helicobacter pylori infectious disease malignant colon neoplasm nasopharyngeal carcinoma ovarian cancer pituitary cancer cystic fibrosis Helicobacter Infections interstitial cystitis bagassosis pneumoconiosis pilocytic astrocytoma schizophrenia astrocytic tumor breast carcinoma glioblastoma Helicobacter pylori infectious disease malignant colon neoplasm nasopharyngeal carcinoma ovarian cancer pituitary cancer cystic fibrosis Helicobacter Infections interstitial cystitis malignant glioma non-small cell lung carcinoma ovarian carcinoma breast cancer esophageal adenocarcinoma Helicobacter pylori infection, susceptibility to large cell medulloblastoma medulloblastoma oligodendroglioma