3RNQ
Crystal structure of the complex between the extracellular domains of mouse PD-1 mutant and PD-L2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | d3rnqa_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054515 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | PF07686 | e3rnqA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e3rnqB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth A] | PDCD1 (Programmed cell death protein 1) | 1V-LIKE | Mus musculus (house mouse) | PDCD1*01 | V-LIKE-DOMAIN V-LIKE | RPI | 1V-LIKE | IMGT (202416-0) |
A [auth B] | PDCD1LG2 (Programmed cell death 1 ligand 2) | 1V-1C-LIKE | Mus musculus (house mouse) | PDCD1LG2*01 | V-LIKE-DOMAIN V-LIKE, C-LIKE-DOMAIN C-LIKE | RPI | 1V-1C-LIKE | IMGT (202416-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
A [auth B] | PF08205 | CD80-like C2-set immunoglobulin domain (C2-set_2) | CD80-like C2-set immunoglobulin domain | These domains belong to the immunoglobulin superfamily. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth A] | IPR003599 | Immunoglobulin subtype | Domain |
B [auth A] | IPR042379 | Programmed cell death protein 1 | Family |
B [auth A] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth A] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth A] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth B] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth B] | IPR003599 | Immunoglobulin subtype | Domain |
A [auth B] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth B] | IPR013162 | CD80-like, immunoglobulin C2-set | Domain |
A [auth B] | IPR007110 | Immunoglobulin-like domain | Domain |