Crystal structure analysis of the plant protease Deg1
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | e3qo6A1 | A: Cupredoxin-like | X: Cupredoxin-related | H: Cupredoxin-related | T: TetR_N | F: | ECOD (20:10:01) | |
| C | e3qo6C1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Transmembrane protein 14A | T: Radical_SAM | F: | ECOD (20:10:01) | |
| B | e3qo6B1 | A: Alpha-beta plaits | X: Phage tail protein-like | H: Transmembrane protein 14A | T: Radical_SAM | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
| A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
| C | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
| C | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
| B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
| B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13180 | PDZ domain (PDZ_2) | PDZ domain | Domain | ||
| PF13365 | Trypsin-like peptidase domain (Trypsin_2) | Trypsin-like peptidase domain | This family includes trypsin-like peptidase domains. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
| IPR001940 | Peptidase S1C | Family | |
| IPR036034 | PDZ superfamily | Homologous Superfamily | |
| IPR051201 | Chloroplastic and Bacterial Serine Proteases | Family | |
| IPR001478 | PDZ domain | Domain | |
| IPR039382 | Protease Do-like 1/8, PDZ domain | Domain | |
| IPR043504 | Peptidase_S1_PA_chymotrypsin | Unknown |














