3QDE | pdb_00003qde

The structure of Cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_transf_36	e3qdeA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: Glyco_transf_36	ECOD (1.6)
A	Glyco_hydro_65C_1	e3qdeA3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_65C_1	ECOD (1.6)
A	Glyco_hydro_36	e3qdeA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_36	ECOD (1.6)
B	Glyco_transf_36	e3qdeB1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: supersandwich (From Topology)	T: supersandwich	F: Glyco_transf_36	ECOD (1.6)
B	Glyco_hydro_65C_1	e3qdeB3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycoside hydrolase family 127 middle domain-related (From Topology)	T: Glycoside hydrolase family 127 middle domain-related	F: Glyco_hydro_65C_1	ECOD (1.6)
B	Glyco_hydro_36	e3qdeB2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_36	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.98.40	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.2.0)
A	1.20.890.20	Mainly Alpha	Up-down Bundle	cAMP-dependent Protein Kinase, Chain A	mpn423 like domain	CATH (4.2.0)
A	2.60.420.10	Mainly Beta	Sandwich	Maltose phosphorylase, domain 3	Maltose phosphorylase, domain 3	CATH (4.2.0)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.2.0)
B	2.70.98.40	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.2.0)
B	1.20.890.20	Mainly Alpha	Up-down Bundle	cAMP-dependent Protein Kinase, Chain A	mpn423 like domain	CATH (4.2.0)
B	2.60.420.10	Mainly Beta	Sandwich	Maltose phosphorylase, domain 3	Maltose phosphorylase, domain 3	CATH (4.2.0)
B	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06165	Glycosyl hydrolase 94, supersandwich domain (GH94_b-supersand)	Glycosyl hydrolase 94, supersandwich domain	This entry represents a beta-supersandwich domain found in the superfamily of enzymes referred to as GH94, formerly known as glycosyltransferase family GT36 [1]. Family 94 of glycoside hydrolases exclusively contains phosphorylases that cleave beta-g ...	This entry represents a beta-supersandwich domain found in the superfamily of enzymes referred to as GH94, formerly known as glycosyltransferase family GT36 [1]. Family 94 of glycoside hydrolases exclusively contains phosphorylases that cleave beta-glycosidic bonds. The substrate specificities found in this family are: cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Some members of this family contain two copies of this domain.	Domain
A, B	PF17167	Glycosyl hydrolase 94 superfamily, catalytic domain (Glyco_hydro_94)	Glycosyl hydrolase 94 superfamily, catalytic domain	-	Repeat
A, B	PF03633	Glycosyl hydrolase family 65, C-terminal domain (Glyco_hydro_65C)	Glycosyl hydrolase family 65, C-terminal domain	This family of glycosyl hydrolases contains vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase (MP) is a dimeric enzyme that catalyses the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. ...	This family of glycosyl hydrolases contains vacuolar acid trehalase and maltose phosphorylase.Maltose phosphorylase (MP) is a dimeric enzyme that catalyses the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Cellobiose phosphorylase	binding carbohydrate binding 1,4-alpha-oligoglucan phosphorylase activity glycosyltransferase activity cellobiose phosphorylase activity transferase activity hexosyltransferase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B	IPR052047	Glycosyl Hydrolase 94 Enzymes	Family
A, B	IPR010383	Glycosyl hydrolase 94, supersandwich domain	Domain
A, B	IPR037825	Cellobiose phosphorylase, N-terminal	Domain
A, B	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B	IPR033432	Glycosyl hydrolase 94, catalytic domain	Domain
A, B	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily
A, B	IPR037018	Glycoside hydrolase family 65, N-terminal domain	Homologous Superfamily
A, B	IPR005194	Glycoside hydrolase family 65, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.