3QBQ
Crystal structure of extracellular domains of mouse RANK-RANKL complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3qbqa_ | All beta proteins | TNF-like | TNF-like | TNF-like | TRANCE/RANKL cytokine | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C | d3qbqc_ | All beta proteins | TNF-like | TNF-like | TNF-like | TRANCE/RANKL cytokine | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00229 | e3qbqA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
C | PF00229 | e3qbqC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
D | PF00020 | e3qbqD2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
D | PF18278 | e3qbqD1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF18278 | ECOD (1.6) |
B | PF00020 | e3qbqB2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
B | PF18278 | e3qbqB1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF18278 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
B | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain | |
PF18278 | Receptor activator of the NF-KB cysteine-rich repeat domain 2 (RANK_CRD_2) | Receptor activator of the NF-KB cysteine-rich repeat domain 2 | This domain is found in the receptor activator of the NF-KB (RANK) present in Mus musculus. RANK and its cognate ligand RANKL play a role in bone remodelling, immune function and mammary gland development in conjunction with various cytokines and hor ... | Domain | |
PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR006052 | Tumour necrosis factor domain | Domain | |
IPR017355 | Tumour necrosis factor ligand 10/11 | Family | |
IPR022323 | Tumour necrosis factor receptor 11 | Family | |
IPR022361 | Tumour necrosis factor receptor 11A | Family | |
IPR001368 | TNFR/NGFR cysteine-rich region | Domain | |
IPR041648 | Rank, cysteine-rich repeat domain 2 | Domain | |
IPR034040 | Tumor necrosis factor receptor 11A, N-terminal | Domain |