3OKA | pdb_00003oka

Crystal structure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Gtf3_C	e3okaB1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Gtf3_C	ECOD (v294.1)
B	PGM_PMM_II	e3okaB2	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: PGM_PMM_II	ECOD (v294.1)
A	DctP	e3okaA1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: DctP	ECOD (v294.1)
A	PGM_PMM_II	e3okaA2	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: PGM_PMM_II	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)
A	3.40.50.2000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycogen Phosphorylase B	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00534	Glycosyl transferases group 1 (Glycos_transf_1)	Glycosyl transferases group 1	Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members o ...	Mutations in this domain of Swiss:P37287 lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.	Domain
A, B	PF13439	Glycosyltransferase Family 4 (Glyco_transf_4)	Glycosyltransferase Family 4		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	N-terminal His-affinity tag	-	-	-
A, B	GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	initiation-specific glycolipid 1,6-alpha-mannosyltransferase activity glycosyltransferase activity alpha-1,6-mannosyltransferase activity mannosyltransferase activity transferase activity hexosyltransferase activity catalytic activity phosphatidylinositol alpha-mannosyltransferase activity	carbohydrate derivative biosynthetic process glycolipid metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process glycolipid biosynthetic process primary metabolic process biosynthetic process metabolic process cellular process lipid metabolic process phosphatidylinositol metabolic process phosphorus metabolic process phospholipid biosynthetic process carbohydrate derivative biosynthetic process glycolipid metabolic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process glycolipid biosynthetic process primary metabolic process biosynthetic process metabolic process cellular process lipid metabolic process phosphatidylinositol metabolic process phosphorus metabolic process phospholipid biosynthetic process phospholipid metabolic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050194	Glycosyltransferase group 1	Family
A, B	IPR028098	Glycosyltransferase subfamily 4-like, N-terminal domain	Domain
A, B	IPR001296	Glycosyl transferase, family 1	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.