3KIE | pdb_00003kie

Crystal structure of adeno-associated virus serotype 3B

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3kieb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
C	d3kiec_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
E	d3kiee_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
F	d3kief_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
H	d3kieh_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
N	d3kien_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
P	d3kiep_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
S	d3kies_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
T	d3kiet_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
R	d3kier_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
Q	d3kieq_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
O	d3kieo_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
M	d3kiem_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
L	d3kiel_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
K	d3kiek_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
J	d3kiej_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
I	d3kiei_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
G	d3kieg_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
D	d3kied_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)
A	d3kiea_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	(Adeno-associated virus 3B ) [TaxId: 68742 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8071434	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Parvo_coat	e3kieB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
C	Parvo_coat	e3kieC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
E	Parvo_coat	e3kieE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
F	Parvo_coat	e3kieF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
H	Parvo_coat	e3kieH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
N	Parvo_coat	e3kieN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
P	Parvo_coat	e3kieP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
S	Parvo_coat	e3kieS1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
T	Parvo_coat	e3kieT1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
R	Parvo_coat	e3kieR1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
Q	Parvo_coat	e3kieQ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
O	Parvo_coat	e3kieO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
M	Parvo_coat	e3kieM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
L	Parvo_coat	e3kieL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
K	Parvo_coat	e3kieK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
J	Parvo_coat	e3kieJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
I	Parvo_coat	e3kieI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
G	Parvo_coat	e3kieG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
D	Parvo_coat	e3kieD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)
A	Parvo_coat	e3kieA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Parvo_coat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
C	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
E	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
F	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
H	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
N	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
P	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
S	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
T	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
R	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
Q	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
O	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
M	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
L	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
K	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
J	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
I	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
G	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
D	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)
A	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR013607	Phospholipase A2-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily