Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth 2] | DHDPS | e3jbq21 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| K [auth 1] | DHDPS | e3jbq11 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| H [auth G] | DHDPS | e3jbqG1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| E [auth C] | DHDPS | e3jbqC1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| F | DHDPS | e3jbqF1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| C [auth B] | DHDPS | e3jbqB1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| J [auth h] | DHDPS | e3jbqh2 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| J [auth h] | EF-hand_1, EF-hand_6, EF-hand_7 | e3jbqh1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EF-hand_1, EF-hand_6, EF-hand_7 | ECOD (v294.1) |
| B [auth H] | DHDPS | e3jbqH2 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| B [auth H] | EF-hand_1, EF-hand_6, EF-hand_7 | e3jbqH1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EF-hand_1, EF-hand_6, EF-hand_7 | ECOD (v294.1) |
| I [auth l] | DHDPS | e3jbql1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
| A [auth L] | DHDPS | e3jbqL1 | A: a/b three-layered sandwiches | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: DHDPS | ECOD (v294.1) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| B [auth H], J [auth h] | Fab 2E8 | VH-CH1 | Mus musculus (house mouse) | IGHV14-4*02, IGHJ3*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202612-0) |
| A [auth L], I [auth l] | Fab 2E8 | L-KAPPA | Mus musculus (house mouse) | IGKV6-13*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202612-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| B [auth H], J [auth h] | Heavy Chain | IGHV14 | - | phosphodiesterase 5/6 chimera catalytic domain | SAbDab (2026-03-27) |
| A [auth L], I [auth l] | Light Chain | IGKV6 | Kappa | phosphodiesterase 5/6 chimera catalytic domain | SAbDab (2026-03-27) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| K [auth 1], L [auth 2] | PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain |
| E [auth C], H [auth G] | PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain |
| C [auth B], F | PF00233 | 3'5'-cyclic nucleotide phosphodiesterase (PDEase_I) | 3'5'-cyclic nucleotide phosphodiesterase | Domain | |














