Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| M | SCOP2B Superfamily | V-type ATP synthase subunit C | 8040383 | 3000323 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | VAPG-like | 8101875 | 3002722 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | AtpF-like | 8033711 | 3000828 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| M | V-set | e3j0jM1 | A: a/b three-layered sandwiches | X: Baculovirus p35 protein-related | H: RIFT-related | T: Phage tail proteins | F: V-set | ECOD (v294.1) |
| J | vATP-synt_E | e3j0jJ1 | A: a/b three-layered sandwiches | X: jelly-roll | H: Acetamidase/Formamidase-like | T: Acetamidase/Formamidase-like | F: vATP-synt_E | ECOD (v294.1) |
| J | e3j0jJ2 | A: a/b three-layered sandwiches | X: jelly-roll | H: Acetamidase/Formamidase-like | T: Acetamidase/Formamidase-like | F: | ECOD (v294.1) | |
| L | vATP-synt_E | e3j0jL1 | A: a/b three-layered sandwiches | X: jelly-roll | H: Acetamidase/Formamidase-like | T: Acetamidase/Formamidase-like | F: vATP-synt_E | ECOD (v294.1) |
| I | e3j0jI1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: RIFT-related | T: acid protease | F: | ECOD (v294.1) | |
| K | Sigma70_r2,Sigma70_ner | e3j0jK1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: SAM/DNA-glycosylase | T: SAM domain-like | F: Sigma70_r2,Sigma70_ner | ECOD (v294.1) |
| H | MHC_I | e3j0jH1 | A: a/b three-layered sandwiches | X: MHC antigen-recognition domain | H: MHC antigen-recognition domain | T: MHC antigen-recognition domain | F: MHC_I | ECOD (v294.1) |
| D | WD40, eIF2A, Beta-prop_WDR5 | e3j0jD1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: WD40, eIF2A, Beta-prop_WDR5 | ECOD (v294.1) |
| D | V-set | e3j0jD4 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (v294.1) |
| E | WD40, eIF2A, Beta-prop_WDR5 | e3j0jE1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: WD40, eIF2A, Beta-prop_WDR5 | ECOD (v294.1) |
| E | V-set | e3j0jE4 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (v294.1) |
| F | WD40, eIF2A, Beta-prop_WDR5 | e3j0jF1 | A: a/b three-layered sandwiches | X: Lipocalins/Streptavidin | H: Zn-dependent exopeptidases | T: Zn-dependent exopeptidases | F: WD40, eIF2A, Beta-prop_WDR5 | ECOD (v294.1) |
| F | V-set | e3j0jF4 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (v294.1) |
| A | THUMP | e3j0jA1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: THUMP | ECOD (v294.1) |
| B | THUMP | e3j0jB1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: THUMP | ECOD (v294.1) |
| C | THUMP | e3j0jC1 | A: a/b three-layered sandwiches | X: Transmembrane heme-binding four-helical bundle | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: THUMP | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family | |
| PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family | |
| PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family | |
| PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |














