Annotations: 3IYL

Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Med6	e3iylA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
B	Biotin_carb_C	e3iylB1	A: alpha arrays	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: Biotin_carb_C	ECOD (v295)
D	Hydrolase	e3iylD2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
F	Hydrolase	e3iylF2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
G	Med6	e3iylG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
H	Hydrolase	e3iylH2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
I	Med6	e3iylI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
J	Hydrolase	e3iylJ2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
K	Med6	e3iylK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
N	Hydrolase	e3iylN2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
O	Med6	e3iylO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
P	Hydrolase	e3iylP2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
Q	Med6	e3iylQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
R	Hydrolase	e3iylR2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
T	Hydrolase	e3iylT2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
S	Med6	e3iylS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
M	Med6	e3iylM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
L	Hydrolase	e3iylL2	A: alpha arrays	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Hydrolase	ECOD (v295)
E	Med6	e3iylE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
C	Med6	e3iylC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Med6	ECOD (v295)
U	Sigma_1_2	e3iylU1	A: alpha arrays	X: Outer capsid protein sigma 3-related	H: PsV capsid protein	T: PsV capsid protein	F: Sigma_1_2	ECOD (v295)
V	PBP	e3iylV1	A: alpha arrays	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v295)
W	Reovirus_L2_N	e3iylW1	A: alpha arrays	X: HIT-like	H: HIT-related	T: HIT-related	F: Reovirus_L2_N	ECOD (v295)
W	Reovirus_L2_GTase	e3iylW2	A: alpha arrays	X: HIT-like	H: HIT-related	T: HIT-related	F: Reovirus_L2_GTase	ECOD (v295)
W	Reovirus_L2_4th	e3iylW3	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_4th	ECOD (v295)
W	Reovirus_L2_MT1	e3iylW4	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_MT1	ECOD (v295)
W	Reovirus_L2_MT2	e3iylW5	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_MT2	ECOD (v295)
W	Reovirus_L2_6th	e3iylW6	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_6th	ECOD (v295)
W	Reovirus_L2_7th	e3iylW7	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_7th	ECOD (v295)
W	Reovirus_L2_8th	e3iylW8	A: alpha arrays	X: CH domain-like	H: Calponin-homology domain-like	T: Calponin-homology domain-like	F: Reovirus_L2_8th	ECOD (v295)
X	MR_MLE_N	e3iylX1	A: alpha arrays	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: MR_MLE_N	ECOD (v295)
Y	zf-C2H2_6	e3iylY1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: zf-C2H2_6	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
B	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
D	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
D	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
F	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
F	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
H	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
H	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
J	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
J	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
N	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
N	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
P	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
P	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
R	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
R	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
T	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
T	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
L	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
L	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
U	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
V	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
W	3.90.1810.10	Alpha Beta	Alpha-Beta Complex	Reovirus components fold	Reovirus components	CATH (4.3.0)
W	3.55.60.10	Alpha Beta	3-Layer(bab) Sandwich	Reovirus components fold	Reovirus components	CATH (4.3.0)
W	3.40.50.10760	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Reovirus core	CATH (4.3.0)
W	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
W	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

3IYL | pdb_00003iyl

Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage