3IYL | pdb_00003iyl

Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y	zf-C2H2_6	e3iylY1	A: a/b three-layered sandwiches	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers	T: beta-beta-alpha zinc fingers	F: zf-C2H2_6	ECOD (v294.1)
X	MR_MLE_N	e3iylX1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: MR_MLE_N	ECOD (v294.1)
W		e3iylW1	A: a/b three-layered sandwiches	X: HIT-like	H: HIT-related	T: HIT-related	F:	ECOD (v294.1)
W	Reovirus_L2_GTase	e3iylW2	A: a/b three-layered sandwiches	X: HIT-like	H: HIT-related	T: HIT-related	F: Reovirus_L2_GTase	ECOD (v294.1)
W		e3iylW3	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F:	ECOD (v294.1)
W	Reovirus_L2_MT1	e3iylW4	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Reovirus_L2_MT1	ECOD (v294.1)
W	Reovirus_L2_MT2	e3iylW5	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Reovirus_L2_MT2	ECOD (v294.1)
W	Reovirus_L2_6th	e3iylW6	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Reovirus_L2_6th	ECOD (v294.1)
W	Reovirus_L2_7th	e3iylW7	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Reovirus_L2_7th	ECOD (v294.1)
W	VP4_haemagglut	e3iylW8	A: a/b three-layered sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: VP4_haemagglut	ECOD (v294.1)
V	PBP	e3iylV1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Immunoglobulin-related	T: PEBP-like	F: PBP	ECOD (v294.1)
U	Sigma_1_2	e3iylU1	A: a/b three-layered sandwiches	X: Outer capsid protein sigma 3-related	H: PsV capsid protein	T: PsV capsid protein	F: Sigma_1_2	ECOD (v294.1)
T	Docking	e3iylT2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
R	Docking	e3iylR2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
P	Docking	e3iylP2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
N	Docking	e3iylN2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
L	Docking	e3iylL2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
J	Docking	e3iylJ2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
H	Docking	e3iylH2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
F	Docking	e3iylF2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
D	Docking	e3iylD2	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Docking	ECOD (v294.1)
B	Biotin_carb_C	e3iylB1	A: a/b three-layered sandwiches	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: Biotin_carb_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
W	3.90.1810.10	Alpha Beta	Alpha-Beta Complex	Reovirus components fold	Reovirus components	CATH (4.3.0)
W	3.55.60.10	Alpha Beta	3-Layer(bab) Sandwich	Reovirus components fold	Reovirus components	CATH (4.3.0)
W	3.40.50.10760	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Reovirus core	CATH (4.3.0)
W	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
W	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
V	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
U	1.10.287.1520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
T	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
T	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
R	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
R	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
P	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
P	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
N	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
N	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
L	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
L	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
J	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
J	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
H	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
H	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
F	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
F	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
D	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
D	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)
B	1.10.2050.10	Mainly Alpha	Orthogonal Bundle	Protein mu-1, chain B, domain 3	Protein mu-1, chain B, domain 3	CATH (4.3.0)
B	2.60.120.420	Mainly Beta	Sandwich	Jelly Rolls	Membrane penetration protein mu1, Chain B, domain 4	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 3IYL | pdb_00003iyl

Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

3IYL | pdb_00003iyl