3HHQ

Crystal structure of apo dUT1p from Saccharomyces cerevisiae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3hhqa_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d3hhqb_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
C	d3hhqc_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
D	d3hhqd_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
E	d3hhqe_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
F	d3hhqf_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G	d3hhqg_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H	d3hhqh_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I	d3hhqi_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
J	d3hhqj_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
K	d3hhqk_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
L	d3hhql_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
M	d3hhqm_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
N	d3hhqn_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
O	d3hhqo_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
P	d3hhqp_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
Q	d3hhqq_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
R	d3hhqr_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
S	d3hhqs_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
T	d3hhqt_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
U	d3hhqu_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
V	d3hhqv_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
W	d3hhqw_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
X	d3hhqx_	All beta proteins	beta-clip	dUTPase-like	automated matches	automated matches	yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
B	SCOP2 Family	dUTPase-like	8073089	4002970	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	dUTPase-like	8073090	3001957	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	dUTPase-like	8073090	3001957	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	dUTPase	e3hhqA1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
B	dUTPase	e3hhqB1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
C	dUTPase	e3hhqC1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
D	dUTPase	e3hhqD1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
E	dUTPase	e3hhqE1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
F	dUTPase	e3hhqF1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
G	dUTPase	e3hhqG1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
H	dUTPase	e3hhqH1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
I	dUTPase	e3hhqI1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
J	dUTPase	e3hhqJ1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
K	dUTPase	e3hhqK1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
L	dUTPase	e3hhqL1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
M	dUTPase	e3hhqM1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
N	dUTPase	e3hhqN1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
O	dUTPase	e3hhqO1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
P	dUTPase	e3hhqP1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
Q	dUTPase	e3hhqQ1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
R	dUTPase	e3hhqR1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
S	dUTPase	e3hhqS1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
T	dUTPase	e3hhqT1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
U	dUTPase	e3hhqU1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
V	dUTPase	e3hhqV1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
W	dUTPase	e3hhqW1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)
X	dUTPase	e3hhqX1	A: beta barrels	X: beta-clip	H: dUTPase-like (From Topology)	T: dUTPase-like	F: dUTPase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
B	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
C	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
D	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
E	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
F	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
G	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
H	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
I	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
J	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
K	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
L	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
M	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
N	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
O	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
P	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
Q	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
R	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
S	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
T	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
U	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
V	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
W	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)
X	2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00692	dUTPase (dUTPase)	dUTPase	dUTPase hydrolyses dUTP to dUMP and pyrophosphate.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Deoxyuridine 5'-triphosphate nucleotidohydrolase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding pyrophosphatase activity dITP diphosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity dUTP diphosphatase activity	pyrimidine deoxyribonucleotide metabolic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process cellular nitrogen compound biosynthetic process nucleobase-containing compound metabolic process deoxyribonucleotide biosynthetic process pyrimidine deoxyribonucleotide biosynthetic process heterocycle metabolic process phosphate-containing compound metabolic process organic substance biosynthetic process small molecule metabolic process phosphorus metabolic process pyrimidine deoxyribonucleotide metabolic process nucleotide biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process cellular nitrogen compound biosynthetic process nucleobase-containing compound metabolic process deoxyribonucleotide biosynthetic process pyrimidine deoxyribonucleotide biosynthetic process heterocycle metabolic process phosphate-containing compound metabolic process organic substance biosynthetic process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process pyrimidine-containing compound metabolic process cellular metabolic process 2'-deoxyribonucleotide biosynthetic process cellular nitrogen compound metabolic process primary metabolic process nucleotide metabolic process dUMP biosynthetic process deoxyribonucleoside monophosphate metabolic process dUMP metabolic process organic cyclic compound metabolic process biosynthetic process organophosphate biosynthetic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process nucleoside phosphate biosynthetic process metabolic process pyrimidine nucleoside monophosphate biosynthetic process deoxyribose phosphate biosynthetic process cellular biosynthetic process pyrimidine deoxyribonucleoside monophosphate metabolic process organic substance metabolic process deoxyribonucleotide metabolic process nucleobase-containing small molecule metabolic process deoxyribonucleoside monophosphate biosynthetic process nitrogen compound metabolic process pyrimidine-containing compound biosynthetic process pyrimidine deoxyribonucleoside monophosphate biosynthetic process nucleoside monophosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine nucleoside monophosphate metabolic process organonitrogen compound metabolic process 2'-deoxyribonucleotide metabolic process deoxyribose phosphate metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process nucleoside monophosphate biosynthetic process organophosphate metabolic process cellular process pyrimidine nucleotide biosynthetic process cellular aromatic compound metabolic process catabolic process nucleoside triphosphate catabolic process organophosphate catabolic process pyrimidine nucleoside triphosphate catabolic process nucleoside phosphate catabolic process cellular catabolic process pyrimidine deoxyribonucleoside triphosphate metabolic process pyrimidine deoxyribonucleoside triphosphate catabolic process pyrimidine nucleoside triphosphate metabolic process aromatic compound catabolic process cellular nitrogen compound catabolic process organic cyclic compound catabolic process nucleobase-containing compound catabolic process heterocycle catabolic process nucleoside triphosphate metabolic process organic substance catabolic process deoxyribonucleotide catabolic process purine nucleoside triphosphate catabolic process purine deoxyribonucleoside triphosphate metabolic process purine deoxyribonucleoside triphosphate catabolic process deoxyribonucleoside triphosphate metabolic process organonitrogen compound catabolic process purine deoxyribonucleotide catabolic process purine-containing compound catabolic process deoxyribonucleoside triphosphate catabolic process dITP metabolic process purine deoxyribonucleotide metabolic process deoxyribose phosphate catabolic process purine nucleotide metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process purine-containing compound metabolic process dITP catabolic process pyrimidine-containing compound catabolic process pyrimidine deoxyribonucleotide catabolic process dUTP metabolic process pyrimidine nucleotide catabolic process dUTP catabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR008181	Deoxyuridine triphosphate nucleotidohydrolase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR033704	dUTPase, trimeric	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR036157	dUTPase-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR029054	dUTPase-like	Domain