Annotations: 3GZU

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Rotavirus core (VP2)	8046845	4005324	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Reovirus inner layer core protein p3	8094215	3001935	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Reovirus inner layer core protein p3	8094215	3001935	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8034587	3002477	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8034584	3001154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rota_VP2	e3gzuA1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: Rota_VP2	ECOD (1.6)
B	Rota_VP2	e3gzuB1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: Rota_VP2	ECOD (1.6)
C	Rota_Capsid_VP6_2nd	e3gzuC1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
C	Rota_Capsid_VP6_1st	e3gzuC2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
D	Rota_Capsid_VP6_2nd	e3gzuD1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
D	Rota_Capsid_VP6_1st	e3gzuD2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
E	Rota_Capsid_VP6_2nd	e3gzuE1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
E	Rota_Capsid_VP6_1st	e3gzuE2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
F	Rota_Capsid_VP6_2nd	e3gzuF1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
F	Rota_Capsid_VP6_1st	e3gzuF2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
G	Rota_Capsid_VP6_2nd	e3gzuG1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
G	Rota_Capsid_VP6_1st	e3gzuG2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
H	Rota_Capsid_VP6_2nd	e3gzuH1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
H	Rota_Capsid_VP6_1st	e3gzuH2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
I	Rota_Capsid_VP6_2nd	e3gzuI1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
I	Rota_Capsid_VP6_1st	e3gzuI2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
J	Rota_Capsid_VP6_2nd	e3gzuJ1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
J	Rota_Capsid_VP6_1st	e3gzuJ2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
K	Rota_Capsid_VP6_2nd	e3gzuK1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
K	Rota_Capsid_VP6_1st	e3gzuK2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
L	Rota_Capsid_VP6_2nd	e3gzuL1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
L	Rota_Capsid_VP6_1st	e3gzuL2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
M	Rota_Capsid_VP6_2nd	e3gzuM1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
M	Rota_Capsid_VP6_1st	e3gzuM2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
N	Rota_Capsid_VP6_2nd	e3gzuN1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
N	Rota_Capsid_VP6_1st	e3gzuN2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
O	Rota_Capsid_VP6_2nd	e3gzuO1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
O	Rota_Capsid_VP6_1st	e3gzuO2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
C	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
D	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
E	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
F	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
G	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
H	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
I	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
J	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
J	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
K	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
K	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
L	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
L	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
M	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
M	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
N	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
N	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
O	1.10.1350.10	Mainly Alpha	Orthogonal Bundle	Viral capsid alpha domain	Viral capsid alpha domain	CATH (4.3.0)
O	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05087	Rotavirus VP2 protein (Rota_VP2)	Rotavirus VP2 protein	-	Family
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Inner capsid protein VP2	RNA binding binding organic cyclic compound binding nucleic acid binding	-	viral capsid icosahedral viral capsid virion component viral inner capsid viral nucleocapsid T=2 icosahedral viral capsid
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid T=13 icosahedral viral capsid viral intermediate capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR007779	Rotavirus VP2	Family
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily