3GYH | pdb_00003gyh

Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POB

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	NUDIX	e3gyhX1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: NUDIX	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain (DNA_binding_1)	6-O-methylguanine DNA methyltransferase, DNA binding domain	This is the C-terminal DNA-binding domain of 6-O-methylguanine-DNA methyltransferases [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Alkyltransferase-like protein 1	catalytic activity DNA binding binding damaged DNA binding nucleic acid binding alkylated DNA binding O6-alkylguanine-DNA binding	cellular response to stimulus response to stimulus transcription-coupled nucleotide-excision repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus transcription-coupled nucleotide-excision repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair global genome nucleotide-excision repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
C [auth Z]	DNA (5'-D(CPTPAPCPTPAPGPCPCPAPTPGP*G)-3')	-	-	-
B [auth Y]	DNA (5'-D(GPCPCPAPTPGPGPCPTPAPGPTP*A)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR036217	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Homologous Superfamily
A [auth X]	IPR052520	Alkyltransferase-like DNA repair	Family
A [auth X]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth X]	IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.