3GTD | pdb_00003gtd

2.4 Angstrom crystal structure of fumarate hydratase from Rickettsia prowazekii


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3gtda_ All alpha proteins L-aspartase-like L-aspartase-like L-aspartase/fumarase automated matches (Rickettsia prowazekii str. Madrid E ) [TaxId: 272947 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyL-aspartase-like 8072361 3001572 SCOP2B (2022-06-29)
ASCOP2 FamilyL-aspartase/fumarase 8072360 4001433 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyL-aspartase-like 8072361 3001572 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_L36e3gtdB2 A: alpha bundlesX: HTHH: HTHT: tetra-helical, lambda repressor-likeF: Ribosomal_L36ECOD (develop294)
BBig_10e3gtdB3 A: alpha bundlesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Big_10ECOD (develop294)
AArsA_ATPasee3gtdA1 A: alpha bundlesX: OB-foldH: Nucleic acid-binding proteinT: Nucleic acid-binding proteinF: ArsA_ATPaseECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C Chain B, domain 1CATH (4.3.0)
B1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C Chain A, domain 2CATH (4.3.0)
A1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C Chain B, domain 1CATH (4.3.0)
A1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C Chain A, domain 2CATH (4.3.0)
A1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1 domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00206Lyase (Lyase_1)LyaseDomain
A, B
PF10415Fumarase C C-terminus (FumaraseC_C)Fumarase C C-terminusFumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The ...Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit [1]. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle.
Domain