3FBI
Structure of the Mediator submodule Med7N/31
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Mediator of RNA polymerase II transcription subunit 31 | 8047464 | 4005652 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Mediator of RNA polymerase II transcription subunit 31 | 8105980 | 3002846 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 31 | 8105980 | 3002846 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05983 | e3fbiA1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
C | PF05983 | e3fbiC2 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
B | PF05983 | e3fbiB1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
D | PF05983 | e3fbiD1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05983 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.140.1520 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
C | 6.10.140.1520 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 1.10.10.1340 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Mediator of RNA polymerase II, submodule Med31 (Soh1) | CATH (4.3.0) |
D | 1.10.10.1340 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Mediator of RNA polymerase II, submodule Med31 (Soh1) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05983 | MED7 protein (Med7) | MED7 protein | - | Family | |
PF05669 | SOH1 (Med31) | SOH1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037212 | Mediator complex, subunit Med7/Med21-like | Homologous Superfamily | |
IPR009244 | Mediator complex, subunit Med7 | Family | |
IPR044888 | Mediator complex, subunit Med7 superfmaily | Homologous Superfamily | |
IPR008831 | Mediator complex, subunit Med31 | Family | |
IPR038089 | Mediator of RNA polymerase II, subunit Med31 superfamily | Homologous Superfamily |