Annotations: 3EU7

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PALB2 BRCA2-binding domain-like	8046104	4004878	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	WD40 repeat-like	8092868	3001694	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ANAPC4_WD40_6	e3eu7A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16756	Partner and localizer of BRCA2 WD40 domain (PALB2_WD40)	Partner and localizer of BRCA2 WD40 domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Partner and localizer of BRCA2	DNA binding binding organic cyclic compound binding nucleic acid binding	developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development embryonic organ development embryo development anatomical structure morphogenesis animal organ morphogenesis cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development embryonic organ development embryo development anatomical structure morphogenesis animal organ morphogenesis cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair tissue development mesoderm development somitogenesis epithelium development chordate embryonic development segmentation anterior/posterior pattern specification pattern specification process regionalization embryo development ending in birth or egg hatching somite development anatomical structure formation involved in morphogenesis regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death multicellular organism growth developmental growth growth inner cell mass cell proliferation cell population proliferation in utero embryonic development blastocyst growth blastocyst development post-anal tail morphogenesis	protein-containing complex catalytic complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm protein-containing complex catalytic complex DNA repair complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
B [auth X]	19meric peptide from Breast cancer type 2 susceptibility protein	catalytic activity, acting on a protein N-acetyltransferase activity acyltransferase activity histone H3 acetyltransferase activity transferase activity peptide N-acetyltransferase activity histone acetyltransferase activity acetyltransferase activity peptide-lysine-N-acetyltransferase activity histone modifying activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity N-acyltransferase activity identical protein binding catalytic activity, acting on a protein N-acetyltransferase activity acyltransferase activity histone H3 acetyltransferase activity transferase activity peptide N-acetyltransferase activity histone acetyltransferase activity acetyltransferase activity peptide-lysine-N-acetyltransferase activity histone modifying activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity N-acyltransferase activity identical protein binding protein binding binding enzyme binding protease binding cytoskeletal protein binding gamma-tubulin binding tubulin binding histone H4 acetyltransferase activity DNA binding organic cyclic compound binding single-stranded DNA binding nucleic acid binding	developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process multicellular organism development multicellular organismal process head development central nervous system development developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process multicellular organism development multicellular organismal process head development central nervous system development animal organ development brain development nervous system development system development spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation response to X-ray response to ionizing radiation response to stimulus response to radiation response to abiotic stimulus microtubule organizing center organization microtubule cytoskeleton organization cellular component organization centrosome duplication organelle organization centrosome cycle microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization cell cycle process cellular response to stimulus cellular response to ionizing radiation cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus DNA damage checkpoint signaling regulation of cellular process regulation of cell cycle phase transition signaling negative regulation of biological process regulation of cellular response to stress negative regulation of cell cycle cell cycle phase transition regulation of signal transduction intracellular signal transduction cell communication regulation of cell cycle checkpoint cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction regulation of cell cycle regulation of biological process regulation of signaling regulation of cell cycle process biological regulation DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling DNA damage response regulation of response to stimulus signal transduction in response to DNA damage regulation of cell communication regulation of DNA damage checkpoint cellular metabolic process cellular senescence metabolic process inner cell mass cell proliferation developmental growth chordate embryonic development growth embryo development in utero embryonic development embryo development ending in birth or egg hatching blastocyst growth blastocyst development oogenesis cellular process involved in reproduction in multicellular organism developmental maturation female gamete generation oocyte development anatomical structure maturation germ cell development oocyte maturation oocyte differentiation cell maturation regulation of cytokinesis cytokinesis regulation of cell division cell division cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process DNA metabolic process nucleotide-excision repair DNA repair gonad development reproductive system development female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics development of primary sexual characteristics reproductive structure development DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator signal transduction by p53 class mediator DNA damage response, signal transduction by p53 class mediator DNA damage response, signal transduction resulting in transcription DNA recombination mitotic recombination telomere organization chromosome organization telomere maintenance telomere maintenance via recombination mammary gland development gland development negative regulation of mammary gland epithelial cell proliferation regulation of multicellular organismal process epithelial cell proliferation negative regulation of cell population proliferation epithelium development tissue development regulation of mammary gland epithelial cell proliferation mammary gland epithelium development regulation of cell population proliferation regulation of epithelial cell proliferation negative regulation of multicellular organismal process negative regulation of epithelial cell proliferation mammary gland epithelial cell proliferation establishment of protein localization to telomere protein localization establishment of protein localization cellular localization protein localization to chromosome, telomeric region establishment of localization localization establishment of protein localization to organelle protein localization to chromosome cellular macromolecule localization macromolecule localization protein localization to organelle establishment of protein localization to chromosome mitotic DNA replication DNA-templated DNA replication maintenance of fidelity nuclear DNA replication cell cycle DNA replication mitotic cell cycle cell cycle DNA replication maintenance of fidelity DNA-templated DNA replication DNA replication mitotic cell cycle process mitotic recombination-dependent replication fork processing mitotic DNA replication maintenance of fidelity replication fork processing double-strand break repair recombinational repair double-strand break repair via homologous recombination positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of cellular process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process response to gamma radiation cell death intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator apoptotic signaling pathway intrinsic apoptotic signaling pathway by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage apoptotic process intrinsic apoptotic signaling pathway programmed cell death male meiosis I organelle fission meiotic cell cycle male meiotic nuclear division meiotic cell cycle process nuclear division meiosis I meiosis I cell cycle process meiotic nuclear division positive regulation of cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle response to light stimulus response to UV-C response to UV	protein-containing complex catalytic complex DNA repair complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle protein-containing complex catalytic complex DNA repair complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle secretory granule secretory vesicle vesicle intracellular non-membrane-bounded organelle chromosome chromosome, telomeric region chromosomal region non-membrane-bounded organelle ubiquitin ligase complex nucleus nuclear protein-containing complex transferase complex nuclear ubiquitin ligase complex intracellular protein-containing complex BRCA2-MAGE-D1 complex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen condensed nuclear chromosome nuclear chromosome lateral element synaptonemal structure synaptonemal complex condensed chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR031920	Partner and localiser of BRCA2, WD40 domain	Domain
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR042417	Partner and localizer of BRCA2	Family
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B [auth X]	IPR036315	BRCA2 helical domain superfamily	Homologous Superfamily
B [auth X]	IPR048262	BRCA2, OB2 domain	Domain
B [auth X]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
B [auth X]	IPR015525	Breast cancer type 2 susceptibility protein	Family
B [auth X]	IPR015187	BRCA2, OB1	Domain
B [auth X]	IPR015252	Breast cancer type 2 susceptibility protein, helical domain	Domain
B [auth X]	IPR015188	BRCA2, OB3	Domain
B [auth X]	IPR015205	Tower domain	Domain
B [auth X]	IPR002093	BRCA2 repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q86YC2	Fanconi anemia breast cancer Fanconi anemia complementation group N ovarian cancer cancer prostate cancer hereditary breast ovarian cancer syndrome medulloblastoma breast carcinoma hereditary breast carcinoma Hereditary Nonpolyposis Colorectal Cancer intellectual disability Lynch syndrome acute myeloid leukemia BAP1-related tumor predisposition syndrome Fanconi anemia breast cancer Fanconi anemia complementation group N ovarian cancer cancer prostate cancer hereditary breast ovarian cancer syndrome medulloblastoma breast carcinoma hereditary breast carcinoma Hereditary Nonpolyposis Colorectal Cancer intellectual disability Lynch syndrome acute myeloid leukemia BAP1-related tumor predisposition syndrome ovarian neoplasm pancreatic neoplasm familial pancreatic carcinoma kidney Wilms tumor malignant pancreatic neoplasm adrenal cortex carcinoma bipolar disorder pancreatic cancer, susceptibility to, 3 congenital anemia esophageal atresia/tracheoesophageal fistula familial prostate carcinoma schizophrenia hematopoietic and lymphoid system neoplasm inherited aplastic anemia lung cancer aplastic anemia breast adenocarcinoma ovarian carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia prostate adenocarcinoma exocrine pancreatic carcinoma psoriasis
B [auth X]	Pharos: P51587	prostate cancer Fanconi anemia medulloblastoma breast cancer malignant glioma Fanconi anemia complementation group D1 ovarian cancer kidney Wilms tumor lung carcinoma hereditary breast ovarian cancer syndrome breast carcinoma breast-ovarian cancer, familial, susceptibility to, 2 exocrine pancreatic carcinoma malignant pancreatic neoplasm glioma susceptibility 3 prostate cancer Fanconi anemia medulloblastoma breast cancer malignant glioma Fanconi anemia complementation group D1 ovarian cancer kidney Wilms tumor lung carcinoma hereditary breast ovarian cancer syndrome breast carcinoma breast-ovarian cancer, familial, susceptibility to, 2 exocrine pancreatic carcinoma malignant pancreatic neoplasm glioma susceptibility 3 cancer adult medulloblastoma melanotic medulloblastoma squamous cell neoplasm ovarian carcinoma pancreatic cancer, susceptibility to, 2 familial prostate carcinoma squamous cell carcinoma medullomyoblastoma with myogenic differentiation mixed glioma childhood medulloblastoma Perlman syndrome congenital anemia Lynch syndrome prostate adenocarcinoma Esophageal atresia with or without tracheoesophageal fistula malignant mesothelioma schizophrenia acute lymphoblastic leukemia skin basal cell carcinoma melanoma aplastic anemia squamous cell lung carcinoma myocardial infarction benign neoplasm of pancreas Wilms tumor 1 hereditary breast carcinoma neurofibromatosis type 1 breast adenocarcinoma inherited aplastic anemia ovarian neoplasm lung adenocarcinoma peripheral nervous system disease cholangiocarcinoma malignant colon neoplasm esophageal atresia/tracheoesophageal fistula psoriasis familial pancreatic carcinoma serous adenocarcinoma Fanconi anemia complementation group A small cell lung carcinoma glioblastoma atypical teratoid rhabdoid tumor heart disease osteosarcoma intellectual disability large cell medulloblastoma carcinoma lung benign neoplasm peripheral neuropathy colorectal cancer primitive neuroectodermal tumor desmoplastic/nodular medulloblastoma prostate carcinoma estrogen-receptor negative breast cancer Sjogren syndrome anemia glioma BAP1-related tumor predisposition syndrome urinary bladder cancer hematopoietic and lymphoid system neoplasm bipolar disorder hereditary Wilms tumor isolated growth hormone deficiency type IA ovarian endometrioid adenocarcinoma Li-Fraumeni syndrome pancreatic neoplasm lung cancer

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.