3DLX | pdb_00003dlx

Crystal structure of human 3-oxoacid CoA transferase 1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3dlxd1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Succinate:CoA transferase, N-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d3dlxd2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Succinate:CoA transferase, C-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3dlxc1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Succinate:CoA transferase, N-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d3dlxc2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Succinate:CoA transferase, C-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3dlxb1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Succinate:CoA transferase, N-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3dlxb2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Succinate:CoA transferase, C-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3dlxa1	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase alpha subunit-like	Succinate:CoA transferase, N-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3dlxa2	Alpha and beta proteins (a/b)	NagB/RpiA/CoA transferase-like	NagB/RpiA/CoA transferase-like	CoA transferase beta subunit-like	Succinate:CoA transferase, C-terminal domain	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CoA_trans	e3dlxD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
D	CoA_trans_1	e3dlxD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
C	CoA_trans	e3dlxC5	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
C	CoA_trans_1	e3dlxC6	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
B	CoA_trans	e3dlxB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
B	CoA_trans_1	e3dlxB2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)
A	CoA_trans	e3dlxA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans	ECOD (1.6)
A	CoA_trans_1	e3dlxA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NagB/RpiA/CoA transferase-like	F: CoA_trans_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
C	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
B	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)
A	3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01144	Coenzyme A transferase (CoA_trans)	Coenzyme A transferase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Succinyl-CoA:3-ketoacid-coenzyme A transferase 1	succinyl-CoA:3-oxo-acid CoA-transferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity identical protein binding protein binding binding	response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cellular response to stimulus positive regulation of cell communication regulation of localization response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development cellular response to stimulus positive regulation of cell communication regulation of localization establishment of protein localization regulation of cellular process nitrogen compound transport positive regulation of establishment of protein localization cell communication localization carbohydrate homeostasis establishment of localization in cell positive regulation of insulin secretion involved in cellular response to glucose stimulus positive regulation of insulin secretion intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of biological process regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose glucose homeostasis positive regulation of protein localization insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling homeostatic process positive regulation of biological process positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion regulation of secretion by cell secretion by cell positive regulation of hormone secretion response to monosaccharide response to carbohydrate positive regulation of secretion amide transport signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus positive regulation of cellular process positive regulation of peptide secretion regulation of signaling regulation of transport secretion regulation of peptide transport biological regulation regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport positive regulation of protein secretion peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis positive regulation of transport regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication cellular process insulin secretion positive regulation of signaling connective tissue development adipose tissue development tissue development catabolic process lipid catabolic process ketone body catabolic process primary metabolic process generation of precursor metabolites and energy fatty acid derivative catabolic process fatty acid derivative metabolic process small molecule metabolic process metabolic process ketone body metabolic process small molecule catabolic process lipid metabolic process ketone metabolic process ketone catabolic process response to activity response to nutrient levels response to nutrient response to hormone response to endogenous stimulus response to stress response to starvation response to alcohol response to ethanol	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012792	3-oxoacid CoA-transferase, subunit A	Domain
A, B, C, D	IPR004165	Coenzyme A transferase family I	Family
A, B, C, D	IPR012791	3-oxoacid CoA-transferase, subunit B	Domain
A, B, C, D	IPR004164	Coenzyme A transferase active site	Active Site
A, B, C, D	IPR004163	Coenzyme A transferase binding site	Binding Site
A, B, C, D	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, B, C, D	IPR014388	3-oxoacid CoA-transferase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P55809	succinyl-CoA:3-ketoacid CoA transferase deficiency osteoporosis pilocytic astrocytoma astrocytic tumor Deficiency of 3-oxoacid CoA-transferase intellectual disability lung carcinoma malignant glioma oligodendroglioma atypical teratoid rhabdoid tumor gastric carcinoma lymphoplasmacytic lymphoma malignant mesothelioma Pick disease primitive neuroectodermal tumor succinyl-CoA:3-ketoacid CoA transferase deficiency osteoporosis pilocytic astrocytoma astrocytic tumor Deficiency of 3-oxoacid CoA-transferase intellectual disability lung carcinoma malignant glioma oligodendroglioma atypical teratoid rhabdoid tumor gastric carcinoma lymphoplasmacytic lymphoma malignant mesothelioma Pick disease primitive neuroectodermal tumor Crohn disease glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.