Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyCagD-like8045791 4004688 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCagD-like8092205 3002571 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyCagD-like8092205 3002571 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCagD-like8092205 3002571 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF16567e3cwxA1 A: a+b two layersX: Type III secretory system chaperone-likeH: protein CagD (From Topology)T: protein CagDF: PF16567ECOD (1.6)
BPF16567e3cwxB1 A: a+b two layersX: Type III secretory system chaperone-likeH: protein CagD (From Topology)T: protein CagDF: PF16567ECOD (1.6)
CPF16567e3cwxC1 A: a+b two layersX: Type III secretory system chaperone-likeH: protein CagD (From Topology)T: protein CagDF: PF16567ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF16567Pathogenicity island component CagD (CagD)Pathogenicity island component CagDCagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS ...CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage