3CFI
Nanobody-aided structure determination of the EPSI:EPSJ pseudopilin heterdimer from Vibrio Vulnificus
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Pili subunits | 8003827 | 3000097 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Pili subunits | 8003827 | 3000097 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Pili subunits | 8003827 | 3000097 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Pili subunits | 8003827 | 3000097 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pili subunits | 8036885 | 3000097 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Pili subunits | 8036885 | 3000097 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Pili subunits | 8036885 | 3000097 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Pili subunits | 8036885 | 3000097 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | T2SSI | e3cfiD1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSI | ECOD (1.6) |
J | T2SSI | e3cfiJ1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSI | ECOD (1.6) |
A | T2SSI | e3cfiA1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSI | ECOD (1.6) |
G | T2SSI | e3cfiG1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSI | ECOD (1.6) |
B | T2SSJ | e3cfiB1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSJ | ECOD (1.6) |
E | T2SSJ | e3cfiE1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSJ | ECOD (1.6) |
H | T2SSJ | e3cfiH1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSJ | ECOD (1.6) |
K | T2SSJ | e3cfiK1 | A: a+b two layers | X: Pili subunits (From Topology) | H: Pili subunits (From Topology) | T: Pili subunits | F: T2SSJ | ECOD (1.6) |
L | V-set_12 | e3cfiL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
C | V-set_12 | e3cfiC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
F | V-set_12 | e3cfiF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
I | V-set_8 | e3cfiI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
J | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
A | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
G | 3.30.1300.30 | Alpha Beta | 2-Layer Sandwich | Pantoate--beta-alanine Ligase | Chain: A,domain 2 | CATH (4.3.0) |
L | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
I | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Nanobody NBEPSIJ_11 | VH | Lama glama (llama) | IGHV3S6*01, IGHJ4*01 | V-DOMAIN VH | IG | (VH) | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV3 | - | type ii secretory pathway, pseudopilin epsj | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02501 | Type II secretion system (T2SS), protein I (T2SSI) | Type II secretion system (T2SS), protein I | The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. As me ... | Domain | |
PF11612 | Type II secretion system (T2SS), protein J (T2SSJ) | Type II secretion system (T2SS), protein J | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003413 | Type II secretion system protein GspI, C-terminal | Domain | |
IPR012902 | Prokaryotic N-terminal methylation site | PTM | |
IPR010052 | Type II secretion system protein GspI | Family | |
IPR045584 | Pilin-like | Homologous Superfamily | |
IPR010055 | Type II secretion system protein GspJ | Family | |
IPR012902 | Prokaryotic N-terminal methylation site | PTM | |
IPR051621 | Type II secretion system protein J | Family | |
IPR045584 | Pilin-like | Homologous Superfamily |