3BXM
Structure of an inactive mutant of human glutamate carboxypeptidase II [GCPII(E424A)] in complex with N-acetyl-Asp-Glu (NAAG)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Zn-dependent exopeptidases | 8039261 | 3000662 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PA domain | 8039260 | 3000955 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Zn-dependent exopeptidases | 8039261 | 3000662 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Transferrin receptor-like dimerisation domain | 8039258 | 3000375 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04253 | e3bxmA1 | A: alpha bundles | X: N-cbl like | H: Transferrin receptor ectodomain, C-terminal domain (From Topology) | T: Transferrin receptor ectodomain, C-terminal domain | F: PF04253 | ECOD (1.6) |
A | PF04389 | e3bxmA2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: PF04389 | ECOD (1.6) |
A | PF02225 | e3bxmA3 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: PF02225 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.630.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aminopeptidase | Zn peptidases | CATH (4.3.0) |
A | 3.50.30.30 | Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase | domain 1 | CATH (4.3.0) |
A | 1.20.930.40 | Mainly Alpha | Up-down Bundle | Transcription Elongation Factor S-II | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04253 | Transferrin receptor-like dimerisation domain (TFR_dimer) | Transferrin receptor-like dimerisation domain | This domain is involved in dimerisation of the transferrin receptor as shown in its crystal structure. | Domain | |
PF04389 | Peptidase family M28 (Peptidase_M28) | Peptidase family M28 | - | Family | |
PF02225 | PA domain (PA) | PA domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007484 | Peptidase M28 | Domain | |
IPR036757 | Transferrin receptor-like, dimerisation domain superfamily | Homologous Superfamily | |
IPR039373 | Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like | Family | |
IPR046450 | PA domain superfamily | Homologous Superfamily | |
IPR007365 | Transferrin receptor-like, dimerisation domain | Domain | |
IPR003137 | PA domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth I] | ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :