Annotations: 3BIB

Tim-4 in complex with phosphatidylserine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d3bibx_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Abhydrolase_1	e3bibX1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Abhydrolase_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	T-cell immunoglobulin and mucin domain-containing protein 4	modified amino acid binding binding ion binding anion binding phospholipid binding lipid binding phosphatidylserine binding small molecule binding	localization import into cell transport phagocytosis cellular process apoptotic cell clearance endocytosis establishment of localization vesicle-mediated transport membrane organization cellular component organization organelle organization phagocytosis, engulfment membrane invagination localization import into cell transport phagocytosis cellular process apoptotic cell clearance endocytosis establishment of localization vesicle-mediated transport membrane organization cellular component organization organelle organization phagocytosis, engulfment membrane invagination cellular component organization or biogenesis cytoskeletal rearrangement involved in phagocytosis, engulfment plasma membrane invagination cytoskeleton organization	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth X]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth X]	IPR013106	Immunoglobulin V-set domain	Domain
A [auth X]	IPR003599	Immunoglobulin domain subtype	Domain
A [auth X]	IPR007110	Immunoglobulin-like domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth X]	OPM	Transmembrane	Bitopic proteins	Immunoglobulin superfamily	T-cell immunoglobulin and mucin domain-containing (TIM) protein

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.