3A15
Crystal Structure of Substrate-Free Form of Aldoxime Dehydratase (OxdRE)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Dehydratase_hem | e3a15A2 | A: a+b two layers | X: Alpha-beta plaits | H: Aldoxime dehydratase (From Topology) | T: Aldoxime dehydratase | F: Dehydratase_hem | ECOD (1.6) |
B | Dehydratase_hem | e3a15B2 | A: a+b two layers | X: Alpha-beta plaits | H: Aldoxime dehydratase (From Topology) | T: Aldoxime dehydratase | F: Dehydratase_hem | ECOD (1.6) |
C | Dehydratase_hem | e3a15C2 | A: a+b two layers | X: Alpha-beta plaits | H: Aldoxime dehydratase (From Topology) | T: Aldoxime dehydratase | F: Dehydratase_hem | ECOD (1.6) |
D | Dehydratase_hem | e3a15D2 | A: a+b two layers | X: Alpha-beta plaits | H: Aldoxime dehydratase (From Topology) | T: Aldoxime dehydratase | F: Dehydratase_hem | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
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PF13816 | Haem-containing dehydratase (Dehydratase_hem) | Haem-containing dehydratase | This family includes aldoxime dehydratase, EC:4.99.1.5. This is a haem-containing enzyme, which catalyses the dehydration of aldoximes to their corresponding nitrile [1]. It also includes phenylacetaldoxime dehydratase, EC:4.99.1.7. This haem-contain ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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Aldoxime dehydratase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
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aldoxime dehydratase M-CSA #361 | Aldoxime dehydratase (Oxd) is a heme-containing enzyme that catalyses the dehydration of aldoximes (R–CHN–OH) to the corresponding nitrile (R–C'N). Some species of microbes utilise an aldoxime-nitrile pathway, metabolising aldoximes to the corresponding carboxylic acids through nitriles formed by dehydration of aldoximes with aldoxime dehydratase. There are two pathways for the conversion of nitriles to carboxylic acids, i) the hydrolysis of nitriles by nitrilase, and ii) the sequential actions of nitrile hydratase and amidase. Nitriles are important for biological self-defence mechanisms, and are also of interest as intermediates in some industrial processes. The dehydration reaction proceeds only via N-coordinated substrate in the ferrous heme. The organic substrate is shown by crystallographic and spectroscopic data to be directly coordinated to the heme iron in dehydration of aldoxime, which is a unique example among heme enzymes | Defined by 6 residues: GLU:A-163 [auth A-143]ARG:A-198 [auth A-178]SER:A-239 [auth A-219]HIS:A-319 [auth A-299]PHE:A-326 [auth A-306]HIS:A-340 [auth A-320] | EC: 4.99.1.5 (PDB Primary Data) EC: 4.8.1.2 (UniProt) |