Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF13816e3a15A2 A: a+b two layersX: Alpha-beta plaitsH: Aldoxime dehydratase (From Topology)T: Aldoxime dehydrataseF: PF13816ECOD (1.6)
BPF13816e3a15B2 A: a+b two layersX: Alpha-beta plaitsH: Aldoxime dehydratase (From Topology)T: Aldoxime dehydrataseF: PF13816ECOD (1.6)
CPF13816e3a15C2 A: a+b two layersX: Alpha-beta plaitsH: Aldoxime dehydratase (From Topology)T: Aldoxime dehydrataseF: PF13816ECOD (1.6)
DPF13816e3a15D2 A: a+b two layersX: Alpha-beta plaitsH: Aldoxime dehydratase (From Topology)T: Aldoxime dehydrataseF: PF13816ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF13816Haem-containing dehydratase (Dehydratase_hem)Haem-containing dehydrataseThis family includes aldoxime dehydratase, EC:4.99.1.5. This is a haem-containing enzyme, which catalyses the dehydration of aldoximes to their corresponding nitrile [1]. It also includes phenylacetaldoxime dehydratase, EC:4.99.1.7. This haem-contain ...This family includes aldoxime dehydratase, EC:4.99.1.5. This is a haem-containing enzyme, which catalyses the dehydration of aldoximes to their corresponding nitrile [1]. It also includes phenylacetaldoxime dehydratase, EC:4.99.1.7. This haem-containing enzyme catalyses the dehydration of Z-phenylacetaldoxime to phenylacetonitrile [2]. The enzyme forms an elliptic beta barrel, composed of eight beta-strands, flanked by alpha-helices [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Aldoxime dehydratase - -

InterPro: Protein Family Classification InterPro Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
aldoxime dehydratase  M-CSA #361

Aldoxime dehydratase (Oxd) is a heme-containing enzyme that catalyses the dehydration of aldoximes (R–CHN–OH) to the corresponding nitrile (R–C'N). Some species of microbes utilise an aldoxime-nitrile pathway, metabolising aldoximes to the corresponding carboxylic acids through nitriles formed by dehydration of aldoximes with aldoxime dehydratase. There are two pathways for the conversion of nitriles to carboxylic acids, i) the hydrolysis of nitriles by nitrilase, and ii) the sequential actions of nitrile hydratase and amidase. Nitriles are important for biological self-defence mechanisms, and are also of interest as intermediates in some industrial processes.

The dehydration reaction proceeds only via N-coordinated substrate in the ferrous heme. The organic substrate is shown by crystallographic and spectroscopic data to be directly coordinated to the heme iron in dehydration of aldoxime, which is a unique example among heme enzymes

Defined by 6 residues: GLU:A-163 [auth A-143]ARG:A-198 [auth A-178]SER:A-239 [auth A-219]HIS:A-319 [auth A-299]PHE:A-326 [auth A-306]HIS:A-340 [auth A-320]
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