2BHV | pdb_00002bhv

Structure of ComB10 of the Com Type IV secretion system of Helicobacter pylori

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
D	SCOP2 Family	TrbI-like	8044798	4004140	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	TrbI-like	8052799	3002141	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e2bhvF1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: PARP	F:	ECOD (20:10:01)
E		e2bhvE1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: PARP	F:	ECOD (20:10:01)
D		e2bhvD1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: PARP	F:	ECOD (20:10:01)
C		e2bhvC1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: PARP	F:	ECOD (20:10:01)
B		e2bhvB1	A: Ribonuclease H-like	X: Ribonuclease H-like	H: Ribonuclease H-like	T: PARP	F:	ECOD (20:10:01)
A		e2bhvA1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: MutS_I	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
F	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
E	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
E	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
D	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
D	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
C	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
C	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
B	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
B	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
A	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
A	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	COMB10	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR048018	Type IV secretion system, ComB10-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.