2BHV | pdb_00002bhv

Structure of ComB10 of the Com Type IV secretion system of Helicobacter pylori

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
D	SCOP2 Family	TrbI-like	8044798	4004140	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	TrbI-like	8052799	3002141	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TrbI-like	8052799	3002141	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	TrbI	e2bhvF1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
E	TrbI	e2bhvE1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
D	TrbI	e2bhvD1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
C	TrbI	e2bhvC1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
B	TrbI	e2bhvB1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
A	TrbI	e2bhvA1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
F	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
E	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
E	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
D	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
D	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
C	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
C	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
B	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
B	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)
A	2.40.128.260	Mainly Beta	Beta Barrel	Lipocalin	Type IV secretion system, VirB10/TraB/TrbI	CATH (4.3.0)
A	1.10.1200.160	Mainly Alpha	Orthogonal Bundle	Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03743	Bacterial conjugation TrbI-like protein (TrbI)	Bacterial conjugation TrbI-like protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	COMB10	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR048018	Type IV secretion system, ComB10-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F	OPM	Transmembrane	Alpha-helical polytopic	Type IV secretory system	Type IV secretion system, VirB10/TraB /TrbI

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.