2YU7 | pdb_00002yu7

Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SH2 domain	8067974	3000197	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SH2	e2yu7A1	A: a+b two layers	X: SH2 (From Topology)	H: SH2 (From Topology)	T: SH2	F: SH2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.505.10	Alpha Beta	2-Layer Sandwich	SHC Adaptor Protein	SH2 domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00017	SH2 domain (SH2)	SH2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	natural killer group 2A	binding carbohydrate binding MHC class Ib receptor activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity inhibitory MHC class Ib receptor activity immune receptor activity HLA-E specific inhibitory MHC class Ib receptor activity protein-containing complex binding MHC protein complex binding MHC class I protein complex binding	regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus regulation of cellular process response to stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of immune effector process lymphocyte mediated immunity positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus regulation of cellular process response to stimulus response to biotic stimulus positive regulation of leukocyte mediated cytotoxicity positive regulation of immune response positive regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity positive regulation of immune system process regulation of biological process regulation of natural killer cell mediated immunity immune response response to other organism regulation of innate immune response response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of response to stimulus defense response to other organism positive regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response positive regulation of natural killer cell mediated cytotoxicity regulation of cell killing positive regulation of cell killing regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus positive regulation of lymphocyte mediated immunity positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus regulation of response to stress response to stress innate immune response positive regulation of immune effector process response to external biotic stimulus positive regulation of cellular process positive regulation of innate immune response defense response regulation of leukocyte mediated cytotoxicity biological regulation defense response to symbiont regulation of lymphocyte mediated immunity immune system process cellular process cell killing adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains T cell mediated immunity negative regulation of biological process negative regulation of lymphocyte mediated immunity regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains negative regulation of leukocyte mediated cytotoxicity negative regulation of cellular process negative regulation of cell killing regulation of T cell mediated immunity T cell mediated cytotoxicity regulation of adaptive immune response negative regulation of response to stimulus negative regulation of immune response negative regulation of T cell mediated cytotoxicity negative regulation of immune effector process negative regulation of adaptive immune response adaptive immune response negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T cell mediated cytotoxicity negative regulation of immune system process negative regulation of leukocyte mediated immunity negative regulation of T cell mediated immunity cellular response to stimulus cell surface receptor signaling pathway signaling signal transduction cell communication gamma-delta intraepithelial T cell differentiation developmental process multicellular organismal process cellular developmental process gamma-delta T cell activation hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation gamma-delta T cell differentiation CD8-positive, gamma-delta intraepithelial T cell differentiation T cell activation cell differentiation anatomical structure development T cell differentiation leukocyte differentiation immune response-regulating cell surface receptor signaling pathway natural killer cell inhibitory signaling pathway immune response-inhibiting cell surface receptor signaling pathway immune response-regulating signaling pathway immune response-inhibiting signal transduction immune response-activating signaling pathway innate immune response-activating signaling pathway immune response-activating cell surface receptor signaling pathway response to lectin cellular response to lectin activation of innate immune response activation of immune response innate immune response activating cell surface receptor signaling pathway stimulatory C-type lectin receptor signaling pathway regulation of leukocyte activation regulation of cell activation natural killer cell activation regulation of multicellular organismal process regulation of natural killer cell activation regulation of lymphocyte activation negative regulation of natural killer cell mediated immunity negative regulation of response to external stimulus negative regulation of defense response negative regulation of natural killer cell mediated cytotoxicity negative regulation of response to biotic stimulus negative regulation of innate immune response	protein-containing complex receptor complex cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane
A	Tyrosine-protein phosphatase non-receptor type 6	phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity phosphoprotein binding phosphoric ester hydrolase activity molecular transducer activity catalytic activity, acting on a protein phosphatase activity signaling receptor activity hydrolase activity phosphoprotein phosphatase activity hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity transmembrane receptor protein phosphatase activity transmembrane signaling receptor activity transmembrane receptor protein tyrosine phosphatase activity catalytic activity phosphoprotein binding phosphotyrosine residue binding protein binding binding protein phosphorylated amino acid binding SH3 domain binding protein domain specific binding non-membrane spanning protein tyrosine phosphatase activity SH2 domain binding cell adhesion molecule binding kinase binding enzyme binding protein kinase binding phosphorylation-dependent protein binding modification-dependent protein binding	regulation of defense response response to stimulus regulation of response to external stimulus negative regulation of inflammatory response negative regulation of biological process regulation of response to wounding response to stress regulation of response to stress response to wounding regulation of biological process regulation of inflammatory response to wounding defense response negative regulation of response to stimulus biological regulation regulation of defense response response to stimulus regulation of response to external stimulus negative regulation of inflammatory response negative regulation of biological process regulation of response to wounding response to stress regulation of response to stress response to wounding regulation of biological process regulation of inflammatory response to wounding defense response negative regulation of response to stimulus biological regulation response to external stimulus regulation of inflammatory response negative regulation of response to wounding negative regulation of inflammatory response to wounding regulation of response to stimulus negative regulation of response to external stimulus inflammatory response to wounding negative regulation of defense response inflammatory response cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway signaling response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus signal transduction multicellular organismal process regulation of tumor necrosis factor production negative regulation of tumor necrosis factor production cytokine production regulation of cytokine production negative regulation of cellular process regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process tumor necrosis factor superfamily cytokine production negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression negative regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of tumor necrosis factor superfamily cytokine production metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process epididymis development developmental process multicellular organism development tube development anatomical structure development interleukin-6 production regulation of interleukin-6 production negative regulation of interleukin-6 production protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process negative regulation of lymphocyte proliferation regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation regulation of body fluid levels wound healing homotypic cell-cell adhesion hemostasis platelet aggregation blood coagulation coagulation regulation of biological quality platelet activation regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death intracellular signal transduction intracellular signaling cassette MAPK cascade immune response-regulating cell surface receptor signaling pathway negative regulation of signaling positive regulation of biological process regulation of signal transduction regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway negative regulation of cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response positive regulation of immune system process regulation of signaling immune response-activating cell surface receptor signaling pathway immune response regulation of T cell receptor signaling pathway T cell receptor signaling pathway negative regulation of signal transduction negative regulation of T cell receptor signaling pathway regulation of immune response regulation of cell communication antigen receptor-mediated signaling pathway activation of immune response regulation of immune effector process cell activation involved in immune response myeloid leukocyte activation regulation of mast cell activation involved in immune response leukocyte activation involved in immune response mast cell activation regulation of mast cell activation positive regulation of immune effector process negative regulation of immune response negative regulation of immune effector process myeloid cell activation involved in immune response immune effector process negative regulation of mast cell activation mast cell activation involved in immune response negative regulation of mast cell activation involved in immune response regulation of MAPK cascade regulation of intracellular signal transduction ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade regulation of lipopolysaccharide-mediated signaling pathway negative regulation of lipopolysaccharide-mediated signaling pathway regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms negative regulation of response to biotic stimulus response to lipid cellular response to lipopolysaccharide response to biotic stimulus lipopolysaccharide-mediated signaling pathway cellular response to biotic stimulus response to bacterium response to external biotic stimulus response to other organism response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to lipid response to molecule of bacterial origin positive regulation of leukocyte cell-cell adhesion positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation positive regulation of leukocyte activation positive regulation of cellular process positive regulation of T cell activation positive regulation of cell adhesion lymphocyte costimulation positive regulation of multicellular organismal process T cell costimulation regulation of calcium ion transport regulation of localization cellular localization inorganic ion homeostasis intracellular calcium ion homeostasis transport homeostatic process monoatomic ion transmembrane transport calcium ion homeostasis regulation of monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion calcium ion transport metal ion transport maintenance of location in cell regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport localization intracellular monoatomic cation homeostasis monoatomic ion homeostasis monoatomic ion transport intracellular chemical homeostasis monoatomic cation homeostasis monoatomic cation transport regulation of metal ion transport regulation of sequestering of calcium ion intracellular monoatomic ion homeostasis calcium ion transmembrane import into cytosol regulation of transport regulation of release of sequestered calcium ion into cytosol sequestering of calcium ion regulation of monoatomic ion transport establishment of localization maintenance of location transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport cellular homeostasis chemical homeostasis regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of humoral immune response lymphocyte mediated immunity humoral immune response regulation of humoral immune response mediated by circulating immunoglobulin negative regulation of lymphocyte mediated immunity humoral immune response mediated by circulating immunoglobulin regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immunoglobulin mediated immune response leukocyte mediated immunity negative regulation of B cell mediated immunity negative regulation of humoral immune response mediated by circulating immunoglobulin regulation of adaptive immune response negative regulation of humoral immune response negative regulation of adaptive immune response immunoglobulin mediated immune response adaptive immune response regulation of B cell mediated immunity negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity negative regulation of immunoglobulin mediated immune response B cell mediated immunity negative regulation of leukocyte mediated immunity cell cycle mitotic cell cycle cellular developmental process cell differentiation hemopoiesis megakaryocyte differentiation cell development myeloid cell differentiation megakaryocyte development myeloid cell development B cell receptor signaling pathway innate immune response regulation of innate immune response defense response to symbiont defense response to other organism negative regulation of innate immune response positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling regulation of leukocyte differentiation regulation of developmental process regulation of cell differentiation mononuclear cell differentiation lymphocyte differentiation regulation of cell development regulation of B cell differentiation B cell differentiation regulation of B cell activation regulation of lymphocyte differentiation regulation of multicellular organismal development B cell activation regulation of hemopoiesis leukocyte differentiation leukocyte mediated cytotoxicity natural killer cell mediated cytotoxicity natural killer cell mediated immunity cell killing neutrophil activation regulation of neutrophil activation negative regulation of neutrophil activation granulocyte activation positive regulation of cell population proliferation positive regulation of cell adhesion mediated by integrin regulation of cell adhesion mediated by integrin cell adhesion mediated by integrin protein phosphorylation phosphorylation peptidyl-tyrosine modification peptidyl-amino acid modification peptidyl-tyrosine phosphorylation negative regulation of intracellular signal transduction negative regulation of MAPK cascade regulation of B cell receptor signaling pathway negative regulation of B cell receptor signaling pathway platelet morphogenesis cell morphogenesis anatomical structure morphogenesis platelet formation anatomical structure formation involved in morphogenesis CD27 signaling pathway peptidyl-tyrosine dephosphorylation regulation of type I interferon-mediated signaling pathway interferon-mediated signaling pathway cellular response to type I interferon regulation of cytokine-mediated signaling pathway regulation of response to cytokine stimulus type I interferon-mediated signaling pathway response to type I interferon G protein-coupled receptor signaling pathway angiogenesis regulation of vasculature development tube morphogenesis regulation of anatomical structure morphogenesis system development blood vessel development blood vessel morphogenesis negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development regulation of angiogenesis hematopoietic progenitor cell differentiation regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle mitotic cell cycle process regulation of cell cycle G1/S transition of mitotic cell cycle cell cycle process mitotic cell cycle phase transition	cellular anatomical structure membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cellular anatomical structure membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex alpha-beta T cell receptor complex receptor complex cell periphery plasma membrane signaling receptor complex T cell receptor complex vesicle lumen intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen intracellular membrane-bounded organelle secretory granule lumen endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen specific granule lumen secretory granule secretory vesicle specific granule nucleus intracellular membraneless organelle nucleolus membraneless organelle nuclear lumen nucleoplasm tertiary granule lumen tertiary granule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR016187	C-type lectin fold	Homologous Superfamily
B	IPR001304	C-type lectin-like	Domain
B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
B	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
B	IPR050919	NKG2/CD94 Natural Killer Receptors	Family
A	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A	IPR052123	Non-receptor Tyrosine Phosphatase	Family
A	IPR036860	SH2 domain superfamily	Homologous Superfamily
A	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A	IPR000980	SH2 domain	Domain
A	IPR012152	Protein-tyrosine phosphatase, non-receptor type-6, -11	Family
A	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A	IPR000387	Tyrosine-specific protein phosphatases domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P26715	Behcet disease dental caries psoriasis
A	Pharos: P29350	calcinosis Respiratory Hypersensitivity heart valve disease lung cancer non-small cell lung carcinoma spina bifida colorectal cancer malignant mesothelioma osteosarcoma schizophrenia subependymal giant cell astrocytoma ovarian cancer Sjogren syndrome tuberculosis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	PTR	Parent Component: TYR RESID: AA0039 PSI-MOD : O4'-phospho-L-tyrosine MOD:00048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.