2YQK | pdb_00002yqk

Solution structure of the SANT domain in Arginine-glutamic acid dipeptide (RE) repeats

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Myb/SANT domain	8088107	4000317	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Homeodomain-like	8088108	3000001	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Vinculin	e2yqkA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Osmotin-like	T: Osmotin-like	F: Vinculin	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Arginine-glutamic acid dipeptide repeats protein	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding transcription coactivator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding transcription coactivator activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding sequence-specific DNA binding DNA binding nucleic acid binding	developmental process multicellular organismal process head development animal organ development brain development nervous system development radial glia guided migration of Purkinje cell multicellular organism development hindbrain radial glia guided cell migration central nervous system development anatomical structure development cell migration cellular process cell motility developmental process multicellular organismal process head development animal organ development brain development nervous system development radial glia guided migration of Purkinje cell multicellular organism development hindbrain radial glia guided cell migration central nervous system development anatomical structure development cell migration cellular process cell motility hindbrain development cell migration in hindbrain system development anatomical structure morphogenesis morphogenesis of a branching structure branching morphogenesis of a nerve cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation cellular component organization or biogenesis plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation generation of neurons neuron development cerebellar cortex maturation hindbrain maturation central nervous system maturation cerebellum maturation cerebellar Purkinje cell layer maturation developmental maturation cerebellar cortex development cerebellar Purkinje cell layer development cerebellum development anatomical structure maturation metencephalon development cell population proliferation cell proliferation in external granule layer cerebellar granule cell precursor proliferation cell proliferation in hindbrain neural precursor cell proliferation chromatin organization chromatin remodeling	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen histone deacetylase complex intracellular organelle cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen histone deacetylase complex intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nuclear body membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR043151	Bromo adjacent homology (BAH) domain superfamily	Homologous Superfamily
A	IPR002951	Atrophin-like	Family
A	IPR001025	Bromo adjacent homology (BAH) domain	Domain
A	IPR017884	SANT domain	Domain
A	IPR001005	SANT/Myb domain	Domain
A	IPR000679	Zinc finger, GATA-type	Domain
A	IPR000949	ELM2 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9P2R6	neurodevelopmental disorder with or without anomalies of the brain, eye, or heart chromosome 1p36 deletion syndrome juvenile idiopathic arthritis psoriasis tuberculosis allergic rhinitis atypical teratoid rhabdoid tumor intellectual disability Juvenile psoriatic arthritis lung cancer osteosarcoma subependymal giant cell astrocytoma ulcerative colitis anorexia nervosa autism spectrum disorder neurodevelopmental disorder with or without anomalies of the brain, eye, or heart chromosome 1p36 deletion syndrome juvenile idiopathic arthritis psoriasis tuberculosis allergic rhinitis atypical teratoid rhabdoid tumor intellectual disability Juvenile psoriatic arthritis lung cancer osteosarcoma subependymal giant cell astrocytoma ulcerative colitis anorexia nervosa autism spectrum disorder endogenous depression medulloblastoma ovarian cancer Tourette syndrome vitiligo astrocytic tumor breast cancer Hashimoto thyroiditis large cell medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.