2Y1V
Full length structure of RrgB Pilus protein from Streptococcus pneumoniae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cna B-type domain-like | 8045765 | 3000862 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Bacterial adhesin-like | 8092038 | 3000723 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Bacterial adhesin-like | 8092038 | 3000723 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cna B-type domain-like | 8045765 | 3000862 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cna B-type domain-like | 8045765 | 3000862 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Bacterial adhesin-like | 8092038 | 3000723 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16555 | e2y1vA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16555 | ECOD (1.6) |
A | PF16570 | e2y1vA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16570 | ECOD (1.6) |
A | PF17802 | e2y1vA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF17802 | ECOD (1.6) |
A | PF16569 | e2y1vA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF16569 | ECOD (1.6) |
B | PF16555 | e2y1vB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16555 | ECOD (1.6) |
B | PF16570 | e2y1vB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16570 | ECOD (1.6) |
B | PF17802 | e2y1vB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF17802 | ECOD (1.6) |
B | PF16569 | e2y1vB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF16569 | ECOD (1.6) |
C | PF16555 | e2y1vC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16555 | ECOD (1.6) |
C | PF16570 | e2y1vC4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF16570 | ECOD (1.6) |
C | PF17802 | e2y1vC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: PF17802 | ECOD (1.6) |
C | PF16569 | e2y1vC3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: PF16569 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 2.60.40.740 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1140 | Mainly Beta | Sandwich | Immunoglobulin-like | Collagen-binding surface protein Cna, B-type domain | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.740 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.60.40.1140 | Mainly Beta | Sandwich | Immunoglobulin-like | Collagen-binding surface protein Cna, B-type domain | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.740 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.60.40.1140 | Mainly Beta | Sandwich | Immunoglobulin-like | Collagen-binding surface protein Cna, B-type domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16570 | Gram-positive pilin backbone subunit 3, Cna-B-like domain (GramPos_pilinD3) | Gram-positive pilin backbone subunit 3, Cna-B-like domain | GramPos_pilinD3 is one of the major backbone units of Gram-positive pili, such as those from S.pneumoniae [1]. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three transthyretin ... | Domain | |
PF00746 | LPXTG cell wall anchor motif (Gram_pos_anchor) | LPXTG cell wall anchor motif | - | Motif | |
PF16569 | Gram-positive pilin backbone subunit 2, Cna-B-like domain (GramPos_pilinBB) | Gram-positive pilin backbone subunit 2, Cna-B-like domain | GramPos_pilinBB is one of the major backbone units of Gram-positive pili, such as those from S.pneumoniae [1]. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three transthyretin ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
CELL WALL SURFACE ANCHOR FAMILY PROTEIN | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR032334 | Gram-positive pilin backbone subunit 2, Cna-B-like domain | Domain | |
IPR032332 | Gram-positive pilin backbone subunit 3, Cna-B-like domain | Domain | |
IPR026466 | Fimbrial isopeptide formation D2 domain | Domain | |
IPR019931 | LPXTG cell wall anchor domain | Domain |