2WY3 | pdb_00002wy3

Structure of the HCMV UL16-MICB complex elucidates select binding of a viral immunoevasin to diverse NKG2D ligands

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2wy3a_	Alpha and beta proteins (a+b)	MHC antigen-recognition domain	MHC antigen-recognition domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d2wy3c_	Alpha and beta proteins (a+b)	MHC antigen-recognition domain	MHC antigen-recognition domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	MHC antigen-recognition domain	8039888	3000521	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MHC antigen-recognition domain	8039888	3000521	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8104087	3000071	SCOP2B (2022-06-29)
B	SCOP2 Family	UL16-like	8047165	4005480	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Immunoglobulin (Ig) domain-like	8104087	3000071	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TetR_N	e2wy3A1	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: TetR_N	ECOD (v294.1)
C	HSP90,HATPase_c_3	e2wy3C1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: HSP90,HATPase_c_3	ECOD (v294.1)
D	HSP90,HATPase_c_3	e2wy3D1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: HSP90,HATPase_c_3	ECOD (v294.1)
B		e2wy3B1	A: a/b three-layered sandwiches	X: EGF-like	H: EGF-related	T: EGF/Laminin	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)
C	3.30.500.10	Alpha Beta	2-Layer Sandwich	Murine Class I Major Histocompatibility Complex, H2-DB	Chain A, domain 1	CATH (4.3.0)
D	2.60.40.1990	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.1990	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00129	Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)	Class I Histocompatibility antigen, domains alpha 1 and 2		Domain
B, D	PF17622	Viral unique long protein 16 (UL16)	Viral unique long protein 16	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE B	natural killer cell lectin-like receptor binding protein binding binding signaling receptor binding	response to stimulus immune response immune system process adaptive immune response cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response response to stimulus immune response immune system process adaptive immune response cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway biological regulation regulation of response to stimulus regulation of immune response cellular process activation of immune response multicellular organismal process gamma-delta T cell activation T cell activation cell activation lymphocyte activation leukocyte activation biological process involved in interspecies interaction between organisms disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing response to oxidative stress response to stress response to retinoic acid response to lipid response to chemical response to oxygen-containing compound response to heat response to abiotic stimulus response to temperature stimulus regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus negative regulation of response to biotic stimulus negative regulation of biological process response to biotic stimulus regulation of defense response to virus regulation of response to stress regulation of defense response to virus by host response to external biotic stimulus response to virus negative regulation of defense response to virus by host defense response response to other organism negative regulation of response to stimulus response to external stimulus defense response to virus negative regulation of response to external stimulus negative regulation of defense response negative regulation of defense response to virus	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane
B, D	UNCHARACTERIZED PROTEIN UL16	-	symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host natural killer cell mediated immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C	IPR050208	Antigen-presenting and immune regulatory MHC class I-related	Family
A, C	IPR037055	MHC class I-like antigen recognition-like superfamily	Homologous Superfamily
A, C	IPR003597	Immunoglobulin C1-set	Domain
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR011161	MHC class I-like antigen recognition-like	Domain
A, C	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
A, C	IPR007110	Immunoglobulin-like domain	Domain
B, D	IPR035123	Viral unique long protein 16	Family
B, D	IPR038671	Human cytomegalovirus, UL16 ectodomain	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: Q29980	lung carcinoma ulcerative colitis Dengue hemorrhagic fever Hodgkins lymphoma invasive ductal breast carcinoma lung cancer malignant glioma myositis AIDS pancreatic intraductal papillary-mucinous neoplasm autism spectrum disorder psoriasis carpal tunnel syndrome schizophrenia cutaneous lupus erythematosus lung carcinoma ulcerative colitis Dengue hemorrhagic fever Hodgkins lymphoma invasive ductal breast carcinoma lung cancer malignant glioma myositis AIDS pancreatic intraductal papillary-mucinous neoplasm autism spectrum disorder psoriasis carpal tunnel syndrome schizophrenia cutaneous lupus erythematosus Sjogren syndrome dengue shock syndrome tuberculosis glioblastoma herpes zoster hypertensive disorder laryngeal squamous cell carcinoma metabolic syndrome X osteosarcoma allergic rhinitis pilocytic astrocytoma breast cancer psoriatic arthritis cervical cancer Severe Dengue cystic fibrosis squamous cell lung carcinoma esophageal adenocarcinoma Hashimoto thyroiditis HIV infectious disease interstitial cystitis liver disease malignant ependymoma myasthenia gravis ovarian cancer anterior uveitis plasma cell myeloma breast carcinoma rheumatoid arthritis Crohn disease sinusitis Stevens-Johnson syndrome gastric carcinoma hepatocellular carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.