2WJV
Crystal structure of the complex between human nonsense mediated decay factors UPF1 and UPF2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090881 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090880 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090880 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090881 | 3002019 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2 Family | UPF2 UPF1-binding region-like | 8045223 | 4004361 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Superfamily | UPF2 UPF1-binding region-like | 8057069 | 3002386 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1802 | e2wjvA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: KOG1802 | ECOD (1.6) |
A | AAA_12 | e2wjvA5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
A | AAA_11 | e2wjvA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11 | ECOD (1.6) |
A | UPF1_Zn_bind_2nd | e2wjvA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_2nd | ECOD (1.6) |
A | UPF1_Zn_bind_1st | e2wjvA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_1st | ECOD (1.6) |
B | KOG1802 | e2wjvB4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: KOG1802 | ECOD (1.6) |
B | AAA_12 | e2wjvB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_12 | ECOD (1.6) |
B | AAA_11 | e2wjvB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11 | ECOD (1.6) |
B | UPF1_Zn_bind_2nd | e2wjvB5 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_2nd | ECOD (1.6) |
B | UPF1_Zn_bind_1st | e2wjvB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UPF1_Zn_bind_1st | ECOD (1.6) |
C [auth D] | Upf2 | e2wjvD1 | A: extended segments | X: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | H: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | T: C-terminal region of nonsense mediated decay factor UPF2 | F: Upf2 | ECOD (1.6) |
D [auth E] | Upf2 | e2wjvE1 | A: extended segments | X: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | H: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | T: C-terminal region of nonsense mediated decay factor UPF2 | F: Upf2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18141 | RNA helicase UPF1, 1B domain (UPF1_1B_dom) | RNA helicase UPF1, 1B domain | UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. Together with UPF2 and UPF3, forms a surveillance complex, in which UPF2 acts as ... | Domain | |
PF13086 | AAA domain (AAA_11) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF13087 | AAA domain (AAA_12) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF09416 | RNA helicase (UPF2 interacting domain) (UPF1_Zn_bind) | RNA helicase (UPF2 interacting domain) | UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediat ... | Domain | |
C [auth D], D [auth E] | PF04050 | Up-frameshift suppressor 2 (Upf2) | Up-frameshift suppressor 2 | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q92900 | :