2VAK | pdb_00002vak

Crystal structure of the avian reovirus inner capsid protein sigmaA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Sigma_1_2	e2vakL1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
K	Sigma_1_2	e2vakK1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
J	Sigma_1_2	e2vakJ1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
I	Sigma_1_2	e2vakI1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
H	Sigma_1_2	e2vakH1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
G	Sigma_1_2	e2vakG1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
F	Sigma_1_2	e2vakF1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
E	Sigma_1_2	e2vakE1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
D	Sigma_1_2	e2vakD1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
C	Sigma_1_2	e2vakC1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
B	Sigma_1_2	e2vakB1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)
A	Sigma_1_2	e2vakA1	A: alpha complex topology	X: Core protein VP6 (From Topology)	H: Core protein VP6 (From Topology)	T: Core protein VP6	F: Sigma_1_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF03084	Reoviral Sigma1/Sigma2 family (Sigma_1_2)	Reoviral Sigma1/Sigma2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	SIGMA A	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004317	Sigma1/sigma2, reoviral	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.