2TMD | pdb_00002tmd

CORRELATION OF X-RAY DEDUCED AND EXPERIMENTAL AMINO ACID SEQUENCES OF TRIMETHYLAMINE DEHYDROGENASE


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2tmda1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Trimethylamine dehydrogenase, N-terminal domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)
Ad2tmda2 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase-like Trimethylamine dehydrogenase, C-terminal domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)
Ad2tmda3 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase-like Trimethylamine dehydrogenase, middle domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)
Bd2tmdb1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Trimethylamine dehydrogenase, N-terminal domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)
Bd2tmdb2 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase-like Trimethylamine dehydrogenase, C-terminal domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)
Bd2tmdb3 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase-like Trimethylamine dehydrogenase, middle domain (Methylophilus methylotrophus W3A1 ) [TaxId: 2327 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyThioredoxin reductase-like 8017579 3000050 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFMN-linked oxidoreductases 8017577 3000014 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyThioredoxin reductase-like 8017579 3000050 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFMN-linked oxidoreductases 8017577 3000014 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF27526e2tmdA1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: PF27526ECOD (v294.1)
AFAD_binding_3e2tmdA2 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
ANAD_binding_8e2tmdA3 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: NAD_binding_8ECOD (v294.1)
BPF27526e2tmdB1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: PF27526ECOD (v294.1)
BFAD_binding_3e2tmdB2 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
BNAD_binding_8e2tmdB3 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: NAD_binding_8ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
trimethylamine dehydrogenase  M-CSA #114

Trimethylamine dehydrogenase (TMADH) is an iron-sulfur flavoprotein that catalyses the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN, which is bent by approximately 25 degrees along the N5-N10 axis of the flavin isoalloxazine ring.

Defined by 4 residues: CYS:A-30TYR:A-169HIS:A-172ASP:A-267
 | 
 
Explore in 3DM-CSA Motif Definition